KEGG   PATHWAY: baqu00020
Entry
baqu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus aquiflavi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
baqu00020  Citrate cycle (TCA cycle)
baqu00020

Module
baqu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:baqu00020]
baqu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:baqu00020]
baqu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:baqu00020]
baqu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:baqu00020]
Other DBs
GO: 0006099
Organism
Bacillus aquiflavi [GN:baqu]
Gene
K6959_12725  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
K6959_06335  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K6959_07000  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K6959_12720  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K6959_08360  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K6959_08365  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K6959_06295  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K6959_06300  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K6959_05980  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K6959_05975  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K6959_15585  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
K6959_12455  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K6959_12450  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K6959_12460  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
K6959_02240  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K6959_03265  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K6959_12715  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6959_16225  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
K6959_05170  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K6959_13325  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
K6959_05035  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K6959_05040  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
K6959_14325  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
K6959_05045  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
K6959_04715  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
K6959_04710  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
baqu00010  Glycolysis / Gluconeogenesis
baqu00061  Fatty acid biosynthesis
baqu00062  Fatty acid elongation
baqu00071  Fatty acid degradation
baqu00190  Oxidative phosphorylation
baqu00220  Arginine biosynthesis
baqu00250  Alanine, aspartate and glutamate metabolism
baqu00280  Valine, leucine and isoleucine degradation
baqu00350  Tyrosine metabolism
baqu00470  D-Amino acid metabolism
baqu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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