KEGG   PATHWAY: bar00020
Entry
bar00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus anthracis Ames Ancestor
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bar00020  Citrate cycle (TCA cycle)
bar00020

Module
bar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bar00020]
bar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bar00020]
bar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bar00020]
bar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bar00020]
bar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bar00020]
Other DBs
GO: 0006099
Organism
Bacillus anthracis Ames Ancestor [GN:bar]
Gene
GBAA_2348  mmgD; citrate (Si)-synthase MmgD [KO:K01647] [EC:2.3.3.1]
GBAA_4839  citZ; citrate synthase CitZ [KO:K01647] [EC:2.3.3.1]
GBAA_3677  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
GBAA_4838  citC; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
GBAA_1270  odhA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
GBAA_1269  odhB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
GBAA_2773  acoL; acetoin dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
GBAA_4181  pdhD; pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GBAA_4385  bfmbC; 3-methyl-2-oxobutanoate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
GBAA_3910  putative pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GBAA_3909  putative pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GBAA_3973  sucD; succinate-CoA ligase (ADP-forming), alpha subunit [KO:K01902] [EC:6.2.1.5]
GBAA_3974  sucC; succinate-CoA ligase (ADP-forming), beta subunit [KO:K01903] [EC:6.2.1.5]
GBAA_1862  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
GBAA_4754  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GBAA_4753  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
GBAA_4755  sdhC; succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
GBAA_0423  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
GBAA_1767  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
GBAA_4837  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GBAA_2974  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
GBAA_4157  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GBAA_5019  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GBAA_4184  pdhA; pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
GBAA_4183  pdhB; pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
GBAA_2774  acoC; acetoin dehydrogenase, E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
GBAA_4182  pdhC; pyruvate dehydrogenase complex E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bar00010  Glycolysis / Gluconeogenesis
bar00053  Ascorbate and aldarate metabolism
bar00061  Fatty acid biosynthesis
bar00071  Fatty acid degradation
bar00190  Oxidative phosphorylation
bar00220  Arginine biosynthesis
bar00250  Alanine, aspartate and glutamate metabolism
bar00280  Valine, leucine and isoleucine degradation
bar00350  Tyrosine metabolism
bar00470  D-Amino acid metabolism
bar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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