KEGG   PATHWAY: bari00630
Entry
bari00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia arboris
Class
Metabolism; Carbohydrate metabolism
Pathway map
bari00630  Glyoxylate and dicarboxylate metabolism
bari00630

Module
bari_M00012  Glyoxylate cycle [PATH:bari00630]
bari_M00621  Glycine cleavage system [PATH:bari00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia arboris [GN:bari]
Gene
NLX30_11910  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NLX30_30360  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NLX30_06790  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NLX30_12885  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
NLX30_26350  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
NLX30_34335  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NLX30_37205  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
NLX30_11930  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
NLX30_23015  malate synthase G [KO:K01638] [EC:2.3.3.9]
NLX30_33620  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NLX30_14855  citrate synthase [KO:K01647] [EC:2.3.3.1]
NLX30_28480  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
NLX30_33585  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NLX30_33640  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NLX30_28230  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NLX30_10580  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NLX30_11170  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
NLX30_16060  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NLX30_30075  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NLX30_30105  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
NLX30_34325  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
NLX30_37210  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NLX30_39010  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
NLX30_10575  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
NLX30_16055  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
NLX30_36075  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
NLX30_36090  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
NLX30_23035  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
NLX30_03545  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
NLX30_23030  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
NLX30_03540  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
NLX30_23025  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
NLX30_03535  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
NLX30_33800  catalase [KO:K03781] [EC:1.11.1.6]
NLX30_00080  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
NLX30_17035  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NLX30_05625  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
NLX30_10195  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
NLX30_09815  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
NLX30_05670  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
NLX30_26990  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
NLX30_02510  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
NLX30_27630  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
NLX30_21990  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
NLX30_12550  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
NLX30_12640  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
NLX30_17200  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
NLX30_26820  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
NLX30_20705  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NLX30_25595  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NLX30_03930  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NLX30_00705  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
NLX30_00715  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
NLX30_06380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLX30_08095  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLX30_12480  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLX30_28700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLX30_00710  gcvH; glycine cleavage system protein GcvH [KO:K02437]
NLX30_11025  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
NLX30_11030  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
NLX30_11035  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
NLX30_11285  glycerate kinase [KO:K00865] [EC:2.7.1.165]
NLX30_21120  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
NLX30_19020  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NLX30_22825  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NLX30_03165  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NLX30_29285  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
NLX30_38295  NAD-dependent formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
NLX30_05135  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
NLX30_05140  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
NLX30_33340  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
NLX30_05145  formate dehydrogenase [KO:K00124]
NLX30_33335  fdxH; formate dehydrogenase subunit beta [KO:K00124]
NLX30_05150  NAD(P)H-dependent oxidoreductase subunit E [KO:K00127]
NLX30_33330  formate dehydrogenase subunit gamma [KO:K00127]
NLX30_09835  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
NLX30_15075  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
NLX30_16105  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NLX30_25665  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NLX30_12650  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bari00010  Glycolysis / Gluconeogenesis
bari00020  Citrate cycle (TCA cycle)
bari00030  Pentose phosphate pathway
bari00053  Ascorbate and aldarate metabolism
bari00071  Fatty acid degradation
bari00230  Purine metabolism
bari00250  Alanine, aspartate and glutamate metabolism
bari00260  Glycine, serine and threonine metabolism
bari00620  Pyruvate metabolism
bari00710  Carbon fixation by Calvin cycle
bari00750  Vitamin B6 metabolism
bari00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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