KEGG   PATHWAY: bax00020
Entry
bax00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus anthracis H9401
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bax00020  Citrate cycle (TCA cycle)
bax00020

Module
bax_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bax00020]
bax_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bax00020]
bax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bax00020]
bax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bax00020]
bax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bax00020]
Other DBs
GO: 0006099
Organism
Bacillus anthracis H9401 [GN:bax]
Gene
H9401_4617  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
H9401_2228  Citrate synthase [KO:K01647] [EC:2.3.3.1]
H9401_3495  Aconitase [KO:K01681] [EC:4.2.1.3]
H9401_4616  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H9401_1193  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
H9401_1192  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
H9401_4181  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9401_3986  Pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9401_2643  Acetoin dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
H9401_3724  Pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
H9401_3723  Pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
H9401_3784  Succinate-CoA ligase (ADP-forming), alpha subunit [KO:K01902] [EC:6.2.1.5]
H9401_3785  Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
H9401_1760  Acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
H9401_4537  Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H9401_4536  Succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
H9401_4538  Succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
H9401_0403  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
H9401_1670  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
H9401_4615  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H9401_2836  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
H9401_3964  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
H9401_4796  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
H9401_3989  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
H9401_3988  Pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
H9401_2645  Dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
H9401_3987  Pyruvate dehydrogenase complex E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bax00010  Glycolysis / Gluconeogenesis
bax00053  Ascorbate and aldarate metabolism
bax00061  Fatty acid biosynthesis
bax00071  Fatty acid degradation
bax00190  Oxidative phosphorylation
bax00220  Arginine biosynthesis
bax00250  Alanine, aspartate and glutamate metabolism
bax00280  Valine, leucine and isoleucine degradation
bax00350  Tyrosine metabolism
bax00470  D-Amino acid metabolism
bax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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