KEGG   PATHWAY: bbau00020
Entry
bbau00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroidetes bacterium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbau00020  Citrate cycle (TCA cycle)
bbau00020

Module
bbau_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bbau00020]
bbau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbau00020]
bbau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbau00020]
bbau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbau00020]
Other DBs
GO: 0006099
Organism
Bacteroidetes bacterium [GN:bbau]
Gene
AEM51_11975  type I citrate synthase [KO:K01647] [EC:2.3.3.1]
AEM51_11885  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AEM51_04920  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AEM51_13635  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AEM51_02450  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AEM51_00935  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AEM51_04410  hypothetical protein [KO:K00658] [EC:2.3.1.61]
AEM51_12480  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
AEM51_11925  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AEM51_10635  hypothetical protein [KO:K00382] [EC:1.8.1.4]
AEM51_01565  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AEM51_01560  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AEM51_01185  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
AEM51_08980  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AEM51_05830  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AEM51_05825  fumarate reductase [KO:K00240] [EC:1.3.5.1]
AEM51_05835  succinate dehydrogenase [KO:K00241]
AEM51_11205  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AEM51_02085  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AEM51_08195  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AEM51_13795  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
AEM51_02915  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbau00010  Glycolysis / Gluconeogenesis
bbau00053  Ascorbate and aldarate metabolism
bbau00061  Fatty acid biosynthesis
bbau00071  Fatty acid degradation
bbau00190  Oxidative phosphorylation
bbau00220  Arginine biosynthesis
bbau00250  Alanine, aspartate and glutamate metabolism
bbau00280  Valine, leucine and isoleucine degradation
bbau00350  Tyrosine metabolism
bbau00470  D-Amino acid metabolism
bbau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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