KEGG   PATHWAY: bcad00020
Entry
bcad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bergeyella cardium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcad00020  Citrate cycle (TCA cycle)
bcad00020

Module
bcad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcad00020]
bcad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcad00020]
bcad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcad00020]
bcad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcad00020]
bcad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcad00020]
Other DBs
GO: 0006099
Organism
Bergeyella cardium [GN:bcad]
Gene
DBX24_06410  citrate synthase [KO:K01647] [EC:2.3.3.1]
DBX24_02905  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DBX24_08590  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DBX24_01795  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DBX24_01790  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DBX24_07430  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
DBX24_02130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DBX24_07740  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DBX24_07390  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DBX24_01585  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DBX24_02830  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DBX24_02835  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DBX24_02825  succinate dehydrogenase [KO:K00241]
DBX24_02920  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DBX24_01840  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DBX24_03810  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DBX24_07910  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DBX24_03395  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DBX24_07915  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcad00010  Glycolysis / Gluconeogenesis
bcad00053  Ascorbate and aldarate metabolism
bcad00061  Fatty acid biosynthesis
bcad00071  Fatty acid degradation
bcad00190  Oxidative phosphorylation
bcad00220  Arginine biosynthesis
bcad00250  Alanine, aspartate and glutamate metabolism
bcad00280  Valine, leucine and isoleucine degradation
bcad00350  Tyrosine metabolism
bcad00470  D-Amino acid metabolism
bcad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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