KEGG   PATHWAY: bcai00030
Entry
bcai00030                   Pathway                                
Name
Pentose phosphate pathway - Paraburkholderia caribensis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcai00030  Pentose phosphate pathway
bcai00030

Module
bcai_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bcai00030]
bcai_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bcai00030]
bcai_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bcai00030]
bcai_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bcai00030]
bcai_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:bcai00030]
Other DBs
GO: 0006098
Organism
Paraburkholderia caribensis [GN:bcai]
Gene
K788_0004437  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
K788_0008492  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
K788_0008419  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
K788_0008481  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
K788_0008482  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
K788_0007456  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
K788_0001948  secreted protein [KO:K07404] [EC:3.1.1.31]
K788_0006626  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
K788_0005330  6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
K788_0001723  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
K788_0002671  ribulose-5-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
K788_0006894  transketolase [KO:K00615] [EC:2.2.1.1]
K788_0002126  transketolase subunit A [KO:K00615] [EC:2.2.1.1]
K788_0002125  Transketolase [KO:K00615] [EC:2.2.1.1]
K788_0006610  transaldolase [KO:K00616] [EC:2.2.1.2]
K788_0002449  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
K788_0003243  Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
K788_0008540  Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
K788_0004675  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
K788_0004672  Ribokinase [KO:K00852] [EC:2.7.1.15]
K788_0003904  Ribokinase [KO:K00852] [EC:2.7.1.15]
K788_0003228  Ribokinase [KO:K00852] [EC:2.7.1.15]
K788_0007857  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
K788_0000021  ATP-binding protein PhnN [KO:K05774] [EC:2.7.4.23]
K788_0004022  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
K788_0006914  6-phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
K788_0006915  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K788_0000528  3-oxoacyl-[acyl-carrier protein] reductase [KO:K00034] [EC:1.1.1.47]
K788_0000992  2-Keto-D-gluconate dehydrogenase, membrane-bound, flavoprotein [KO:K19813] [EC:1.1.5.9]
K788_00010380  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
K788_0001706  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
K788_0007678  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
K788_0000451  Gluconate 2-dehydrogenase, membrane-bound, flavoprotein [KO:K06151] [EC:1.1.99.3]
K788_0000452  Gluconate 2-dehydrogenase, membrane-bound, gamma subunit [KO:K06152] [EC:1.1.99.3]
K788_0003883  2-ketogluconate 6-phosphate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
K788_0001840  D-3-phosphoglycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
K788_0005525  Glyoxylate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
K788_0003119  Gluconokinase [KO:K00851] [EC:2.7.1.12]
K788_0006917  gluconate kinase, SKI family [KO:K00851] [EC:2.7.1.12]
K788_0003881  2-ketogluconate kinase [KO:K00874] [EC:2.7.1.45]
K788_0007976  2-keto-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
K788_0001610  L-seryl-tRNA(Sec) selenium transferase-related protein [KO:K17468] [EC:4.3.1.29]
K788_0004630  Fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
K788_0006730  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
K788_0003316  Fructose-1,6-bisphosphatase, type I [KO:K03841] [EC:3.1.3.11]
K788_0007388  Fructose-1,6-bisphosphatase, type I [KO:K01086] [EC:3.1.3.11 3.1.3.37]
K788_0001551  Fructose-1,6-bisphosphatase, type I [KO:K01086] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bcai00010  Glycolysis / Gluconeogenesis
bcai00040  Pentose and glucuronate interconversions
bcai00052  Galactose metabolism
bcai00230  Purine metabolism
bcai00240  Pyrimidine metabolism
bcai00340  Histidine metabolism
bcai00630  Glyoxylate and dicarboxylate metabolism
bcai00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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