KEGG   PATHWAY: bcb00020
Entry
bcb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus cereus B4264
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcb00020  Citrate cycle (TCA cycle)
bcb00020

Module
bcb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcb00020]
bcb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcb00020]
bcb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcb00020]
bcb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcb00020]
bcb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcb00020]
Other DBs
GO: 0006099
Organism
Bacillus cereus B4264 [GN:bcb]
Gene
BCB4264_A2315  mmgD; citrate (Si)-synthase MmgD [KO:K01647] [EC:2.3.3.1]
BCB4264_A4704  citZ; citrate synthase CitZ [KO:K01647] [EC:2.3.3.1]
BCB4264_A3724  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BCB4264_A4703  citC; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BCB4264_A1314  odhA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BCB4264_A1313  odhB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BCB4264_A2782  acoL; acetoin dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
BCB4264_A4273  bfmbC; 3-methyl-2-oxobutanoate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
BCB4264_A4072  pdhD; pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCB4264_A3873  putative pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCB4264_A3872  putative pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCB4264_A3933  sucD; succinate-CoA ligase (ADP-forming), alpha subunit [KO:K01902] [EC:6.2.1.5]
BCB4264_A3934  sucC; succinate-CoA ligase (ADP-forming), beta subunit [KO:K01903] [EC:6.2.1.5]
BCB4264_A1863  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BCB4264_A4625  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCB4264_A4624  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BCB4264_A4626  sdhC; succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BCB4264_A0488  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BCB4264_A1783  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BCB4264_A4702  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCB4264_A2975  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
BCB4264_A4050  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BCB4264_A4879  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BCB4264_A4075  pdhA; pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BCB4264_A4074  pdhB; pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BCB4264_A2783  acoC; acetoin dehydrogenase, E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BCB4264_A4073  pdhC; pyruvate dehydrogenase complex E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcb00010  Glycolysis / Gluconeogenesis
bcb00053  Ascorbate and aldarate metabolism
bcb00061  Fatty acid biosynthesis
bcb00071  Fatty acid degradation
bcb00190  Oxidative phosphorylation
bcb00220  Arginine biosynthesis
bcb00250  Alanine, aspartate and glutamate metabolism
bcb00280  Valine, leucine and isoleucine degradation
bcb00350  Tyrosine metabolism
bcb00470  D-Amino acid metabolism
bcb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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