KEGG   PATHWAY: bcer00020
Entry
bcer00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus cereus FRI-35
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcer00020  Citrate cycle (TCA cycle)
bcer00020

Module
bcer_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcer00020]
bcer_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcer00020]
bcer_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcer00020]
bcer_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcer00020]
bcer_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcer00020]
Other DBs
GO: 0006099
Organism
Bacillus cereus FRI-35 [GN:bcer]
Gene
BCK_12250  citrate synthase [KO:K01647] [EC:2.3.3.1]
BCK_23155  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
BCK_17175  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BCK_12255  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BCK_02050  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BCK_02055  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BCK_15385  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCK_21035  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCK_14365  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCK_16370  pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCK_16375  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCK_16075  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BCK_16070  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BCK_25275  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BCK_12645  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCK_12650  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BCK_12640  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BCK_05700  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BCK_25755  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BCK_12260  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCK_20050  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BCK_15500  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BCK_11325  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BCK_15370  pyruvate dehydrogenase complex E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BCK_15375  Pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BCK_21030  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BCK_15380  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcer00010  Glycolysis / Gluconeogenesis
bcer00053  Ascorbate and aldarate metabolism
bcer00061  Fatty acid biosynthesis
bcer00071  Fatty acid degradation
bcer00190  Oxidative phosphorylation
bcer00220  Arginine biosynthesis
bcer00250  Alanine, aspartate and glutamate metabolism
bcer00280  Valine, leucine and isoleucine degradation
bcer00350  Tyrosine metabolism
bcer00470  D-Amino acid metabolism
bcer00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system