KEGG   PATHWAY: bcet00020
Entry
bcet00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella ceti TE10759-12
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcet00020  Citrate cycle (TCA cycle)
bcet00020

Module
bcet_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcet00020]
bcet_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcet00020]
bcet_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcet00020]
bcet_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcet00020]
bcet_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcet00020]
Other DBs
GO: 0006099
Organism
Brucella ceti TE10759-12 [GN:bcet]
Gene
V910_100840  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
V910_101877  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
V910_100793  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
V910_100131  alpha-ketoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
V910_100132  dihydrolipoyllysine-residue succinyltransferase, E2 component [KO:K00658] [EC:2.3.1.61]
V910_100136  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
V910_200725  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
V910_100861  lpdA-2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
V910_100130  succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
V910_100129  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
V910_100932  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
V910_100153  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
V910_100154  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
V910_100151  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
V910_100152  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
V910_101029  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
V910_201014  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
V910_100128  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
V910_100255  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
V910_102052  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
V910_100858  Dehydrogenase, E1 component [KO:K00161] [EC:1.2.4.1]
V910_100859  transketolase central region [KO:K00162] [EC:1.2.4.1]
V910_200058  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
V910_100860  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcet00010  Glycolysis / Gluconeogenesis
bcet00053  Ascorbate and aldarate metabolism
bcet00061  Fatty acid biosynthesis
bcet00071  Fatty acid degradation
bcet00190  Oxidative phosphorylation
bcet00220  Arginine biosynthesis
bcet00250  Alanine, aspartate and glutamate metabolism
bcet00280  Valine, leucine and isoleucine degradation
bcet00350  Tyrosine metabolism
bcet00470  D-Amino acid metabolism
bcet00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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