KEGG   PATHWAY: bcon00630
Entry
bcon00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia contaminans
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcon00630  Glyoxylate and dicarboxylate metabolism
bcon00630

Module
bcon_M00012  Glyoxylate cycle [PATH:bcon00630]
bcon_M00621  Glycine cleavage system [PATH:bcon00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia contaminans [GN:bcon]
Gene
NL30_01080  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NL30_12565  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NL30_00605  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
NL30_25515  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
NL30_01435  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
NL30_33335  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
NL30_33430  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
NL30_09090  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
NL30_12545  malate synthase [KO:K01638] [EC:2.3.3.9]
NL30_17955  malate synthase [KO:K01638] [EC:2.3.3.9]
NL30_07535  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NL30_07500  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
NL30_02985  excisionase [KO:K01647] [EC:2.3.3.1]
NL30_07555  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NL30_02880  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NL30_13880  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_04035  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_04065  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_13280  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_33330  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_33420  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_26950  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_31590  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_31790  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NL30_32115  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
NL30_13885  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
NL30_26945  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
NL30_35025  dehydratase [KO:K17865] [EC:4.2.1.55]
NL30_35040  crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
NL30_12040  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
NL30_17935  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
NL30_12045  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
NL30_17940  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
NL30_12050  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
NL30_17945  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
NL30_00985  catalase [KO:K03781] [EC:1.11.1.6]
NL30_19440  catalase [KO:K03781] [EC:1.11.1.6]
NL30_32865  katE; hydroperoxidase [KO:K03781] [EC:1.11.1.6]
NL30_07720  catalase [KO:K03781] [EC:1.11.1.6]
NL30_27885  glyoxylate reductase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NL30_32455  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NL30_14190  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
NL30_10135  2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
NL30_14580  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
NL30_01940  hydrolase [KO:K01091] [EC:3.1.3.18]
NL30_02500  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
NL30_10090  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
NL30_20415  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
NL30_28050  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NL30_01795  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NL30_25715  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NL30_25815  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NL30_11775  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NL30_23660  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NL30_00885  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NL30_35845  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NL30_18780  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
NL30_18770  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
NL30_09465  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NL30_12100  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NL30_00035  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NL30_18775  glycine cleavage system H protein [KO:K02437]
NL30_13445  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
NL30_13440  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
NL30_13435  tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
NL30_13165  glycerate kinase [KO:K00865] [EC:2.7.1.165]
NL30_22150  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NL30_18135  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NL30_20795  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NL30_03300  cupin [KO:K01569] [EC:4.1.1.2]
NL30_37660  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
NL30_30990  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
NL30_10505  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
NL30_10500  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
NL30_07275  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
NL30_07280  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
NL30_07270  formate dehydrogenase [KO:K00124]
NL30_10495  formate dehydrogenase [KO:K00124]
NL30_07265  formate dehydrogenase [KO:K00127]
NL30_10490  formate dehydrogenase [KO:K00127]
NL30_14560  esterase [KO:K01432] [EC:3.5.1.9]
NL30_25970  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
NL30_00950  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NL30_26995  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NL30_25705  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bcon00010  Glycolysis / Gluconeogenesis
bcon00020  Citrate cycle (TCA cycle)
bcon00030  Pentose phosphate pathway
bcon00053  Ascorbate and aldarate metabolism
bcon00071  Fatty acid degradation
bcon00230  Purine metabolism
bcon00250  Alanine, aspartate and glutamate metabolism
bcon00260  Glycine, serine and threonine metabolism
bcon00620  Pyruvate metabolism
bcon00710  Carbon fixation by Calvin cycle
bcon00750  Vitamin B6 metabolism
bcon00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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