KEGG   PATHWAY: bcx00020
Entry
bcx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus cereus 03BB102
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcx00020  Citrate cycle (TCA cycle)
bcx00020

Module
bcx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcx00020]
bcx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcx00020]
bcx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcx00020]
bcx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcx00020]
bcx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcx00020]
Other DBs
GO: 0006099
Organism
Bacillus cereus 03BB102 [GN:bcx]
Gene
BCA_2417  mmgD; citrate (Si)-synthase MmgD [KO:K01647] [EC:2.3.3.1]
BCA_4704  citZ; citrate synthase CitZ [KO:K01647] [EC:2.3.3.1]
BCA_3709  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BCA_4703  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BCA_1297  odhA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BCA_1296  odhB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BCA_4272  bfmbC; 3-methyl-2-oxobutanoate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
BCA_4074  pdhD; pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCA_2855  acoL; acetoin dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
BCA_3871  putative pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCA_3870  putative pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCA_3934  sucD; succinate-CoA ligase (ADP-forming), alpha subunit [KO:K01902] [EC:6.2.1.5]
BCA_3935  sucC; succinate-CoA ligase (ADP-forming), beta subunit [KO:K01903] [EC:6.2.1.5]
BCA_1870  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BCA_4623  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCA_4622  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BCA_4624  sdhC; succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BCA_0504  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BCA_1778  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BCA_4702  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCA_3044  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
BCA_4052  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BCA_4894  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BCA_4077  pdhA; pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BCA_4076  pdhB; pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BCA_2856  acoC; acetoin dehydrogenase, E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BCA_4075  pdhC; pyruvate dehydrogenase complex E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcx00010  Glycolysis / Gluconeogenesis
bcx00053  Ascorbate and aldarate metabolism
bcx00061  Fatty acid biosynthesis
bcx00071  Fatty acid degradation
bcx00190  Oxidative phosphorylation
bcx00220  Arginine biosynthesis
bcx00250  Alanine, aspartate and glutamate metabolism
bcx00280  Valine, leucine and isoleucine degradation
bcx00350  Tyrosine metabolism
bcx00470  D-Amino acid metabolism
bcx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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