KEGG   PATHWAY: bdr00020
Entry
bdr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bactrocera dorsalis (oriental fruit fly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bdr00020  Citrate cycle (TCA cycle)
bdr00020

Module
bdr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bdr00020]
bdr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bdr00020]
bdr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bdr00020]
bdr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bdr00020]
bdr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bdr00020]
Other DBs
GO: 0006099
Organism
Bactrocera dorsalis (oriental fruit fly) [GN:bdr]
Gene
105232100  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
105227758  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
105229145  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
105222816  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
105225387  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
105224810  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
105231642  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
105222078  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
105222196  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
105232789  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
105226643  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
105224030  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
105224851  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105230114  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105230850  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105229750  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105228669  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
105228673  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X2 [KO:K00234] [EC:1.3.5.1]
105228335  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
105230673  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
105230269  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
105226732  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
105233482  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
105229360  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
105223756  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105232450  uncharacterized protein LOC105232450 [KO:K00025] [EC:1.1.1.37]
105232353  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105226003  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105227817  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105222325  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
105232182  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
105232191  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
105232199  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial [KO:K00161] [EC:1.2.4.1]
105232200  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
105225832  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
105228741  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bdr00010  Glycolysis / Gluconeogenesis
bdr00053  Ascorbate and aldarate metabolism
bdr00061  Fatty acid biosynthesis
bdr00062  Fatty acid elongation
bdr00071  Fatty acid degradation
bdr00190  Oxidative phosphorylation
bdr00220  Arginine biosynthesis
bdr00250  Alanine, aspartate and glutamate metabolism
bdr00280  Valine, leucine and isoleucine degradation
bdr00350  Tyrosine metabolism
bdr00470  D-Amino acid metabolism
bdr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system