KEGG   PATHWAY: bez00020
Entry
bez00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bartonella elizabethae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bez00020  Citrate cycle (TCA cycle)
bez00020

Module
bez_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bez00020]
bez_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bez00020]
bez_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bez00020]
bez_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bez00020]
Other DBs
GO: 0006099
Organism
Bartonella elizabethae [GN:bez]
Gene
NCTC12898_00793  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC12898_01731  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
NCTC12898_00891  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NCTC12898_01304  icd; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
NCTC12898_01603  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC12898_01602  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC12898_00514  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12898_01601  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
NCTC12898_01604  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC12898_01605  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC12898_01529  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC12898_01528  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC12898_01531  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
NCTC12898_01530  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NCTC12898_01355  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC12898_01606  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC12898_00511  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
NCTC12898_00512  bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NCTC12898_00513  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bez00010  Glycolysis / Gluconeogenesis
bez00061  Fatty acid biosynthesis
bez00190  Oxidative phosphorylation
bez00220  Arginine biosynthesis
bez00250  Alanine, aspartate and glutamate metabolism
bez00280  Valine, leucine and isoleucine degradation
bez00470  D-Amino acid metabolism
bez00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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