KEGG   PATHWAY: bfv00020
Entry
bfv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brevibacterium flavum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bfv00020  Citrate cycle (TCA cycle)
bfv00020

Module
bfv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bfv00020]
bfv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bfv00020]
bfv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bfv00020]
bfv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bfv00020]
bfv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bfv00020]
Other DBs
GO: 0006099
Organism
Brevibacterium flavum [GN:bfv]
Gene
C628_04595  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
C628_08430  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C628_03765  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C628_06120  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C628_02245  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C628_12680  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
C628_12685  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
C628_02965  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
C628_12700  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
C628_02270  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C628_02275  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C628_02265  hypothetical protein [KO:K00241]
C628_05510  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C628_11525  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C628_09665  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C628_03890  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
C628_14240  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
C628_10845  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
C628_10650  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bfv00010  Glycolysis / Gluconeogenesis
bfv00053  Ascorbate and aldarate metabolism
bfv00061  Fatty acid biosynthesis
bfv00071  Fatty acid degradation
bfv00190  Oxidative phosphorylation
bfv00220  Arginine biosynthesis
bfv00250  Alanine, aspartate and glutamate metabolism
bfv00280  Valine, leucine and isoleucine degradation
bfv00350  Tyrosine metabolism
bfv00470  D-Amino acid metabolism
bfv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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