KEGG   PATHWAY: bgf00030
Entry
bgf00030                    Pathway                                
Name
Pentose phosphate pathway - Burkholderia sp. CCGE1003
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgf00030  Pentose phosphate pathway
bgf00030

Module
bgf_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bgf00030]
bgf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bgf00030]
bgf_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bgf00030]
bgf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bgf00030]
bgf_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:bgf00030]
Other DBs
GO: 0006098
Organism
Burkholderia sp. CCGE1003 [GN:bgf]
Gene
BC1003_1630  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BC1003_0886  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BC1003_5730  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BC1003_4793  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BC1003_0885  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
BC1003_1025  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
BC1003_3689  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BC1003_4261  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BC1003_3080  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BC1003_5446  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BC1003_3395  Transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
BC1003_3396  Transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
BC1003_5444  transketolase [KO:K00615] [EC:2.2.1.1]
BC1003_2968  transketolase [KO:K00615] [EC:2.2.1.1]
BC1003_3712  transketolase [KO:K00615] [EC:2.2.1.1]
BC1003_4377  Transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
BC1003_4378  Transketolase central region [KO:K00615] [EC:2.2.1.1]
BC1003_1011  transaldolase [KO:K00616] [EC:2.2.1.2]
BC1003_1422  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
BC1003_3685  Phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
BC1003_1807  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BC1003_1805  ribokinase [KO:K00852] [EC:2.7.1.15]
BC1003_1855  ribokinase [KO:K00852] [EC:2.7.1.15]
BC1003_0802  phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II [KO:K15778] [EC:5.4.2.8 5.4.2.2]
BC1003_4155  phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
BC1003_0311  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BC1003_4745  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BC1003_2950  6-phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
BC1003_2949  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BC1003_4892  short-chain dehydrogenase/reductase SDR [KO:K00034] [EC:1.1.1.47]
BC1003_4047  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
BC1003_3554  SMP-30/Gluconolaconase/LRE-like region-containing protein [KO:K01053] [EC:3.1.1.17]
BC1003_5058  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
BC1003_5936  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
BC1003_5033  Gluconate 2-dehydrogenase (acceptor) [KO:K06151] [EC:1.1.99.3]
BC1003_5032  Gluconate 2-dehydrogenase (acceptor) [KO:K06152] [EC:1.1.99.3]
BC1003_1871  Gluconate 2-dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BC1003_2536  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BC1003_2947  carbohydrate kinase, thermoresistant glucokinase family [KO:K00851] [EC:2.7.1.12]
BC1003_1873  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
BC1003_1561  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
BC1003_3693  Fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
BC1003_5445  fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
BC1003_2861  fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
BC1003_2666  Inositol phosphatase/fructose-16-bisphosphatase [KO:K03841] [EC:3.1.3.11]
BC1003_5442  Inositol phosphatase/fructose-16-bisphosphatase [KO:K01086] [EC:3.1.3.11 3.1.3.37]
BC1003_4739  1-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bgf00010  Glycolysis / Gluconeogenesis
bgf00040  Pentose and glucuronate interconversions
bgf00052  Galactose metabolism
bgf00230  Purine metabolism
bgf00240  Pyrimidine metabolism
bgf00340  Histidine metabolism
bgf00630  Glyoxylate and dicarboxylate metabolism
bgf00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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