KEGG   PATHWAY: bgr00020
Entry
bgr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bartonella grahamii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgr00020  Citrate cycle (TCA cycle)
bgr00020

Module
bgr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bgr00020]
bgr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bgr00020]
bgr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bgr00020]
bgr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bgr00020]
Other DBs
GO: 0006099
Organism
Bartonella grahamii [GN:bgr]
Gene
Bgr_07230  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Bgr_01140  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Bgr_12280  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Bgr_20120  sucA; alpha-ketoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
Bgr_20110  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Bgr_06610  pdhD1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bgr_20100  pdhD2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bgr_20130  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Bgr_20140  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Bgr_19370  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bgr_19360  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bgr_19390  sdhC; succinate dehydrogenase cytochrome b560 subunit [KO:K00241]
Bgr_19380  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
Bgr_17780  fumC; fumarate hydratase C [KO:K01679] [EC:4.2.1.2]
Bgr_20150  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bgr_06580  pdhA; pyruvate dehydrogenase subunit alpha [KO:K00161] [EC:1.2.4.1]
Bgr_06590  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
Bgr_06600  pdhC; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bgr00010  Glycolysis / Gluconeogenesis
bgr00061  Fatty acid biosynthesis
bgr00071  Fatty acid degradation
bgr00190  Oxidative phosphorylation
bgr00220  Arginine biosynthesis
bgr00250  Alanine, aspartate and glutamate metabolism
bgr00280  Valine, leucine and isoleucine degradation
bgr00350  Tyrosine metabolism
bgr00470  D-Amino acid metabolism
bgr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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