KEGG   PATHWAY: bgv00630
Entry
bgv00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bordetella genomosp. 8
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgv00630  Glyoxylate and dicarboxylate metabolism
bgv00630

Module
bgv_M00621  Glycine cleavage system [PATH:bgv00630]
Other DBs
GO: 0046487 0043648
Organism
Bordetella genomosp. 8 [GN:bgv]
Gene
CAL12_21650  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
CAL12_08540  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CAL12_08675  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
CAL12_09030  malate synthase A [KO:K01638] [EC:2.3.3.9]
CAL12_19285  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CAL12_19240  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CAL12_04520  excisionase [KO:K01647] [EC:2.3.3.1]
CAL12_24165  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CAL12_24605  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CAL12_13275  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CAL12_13935  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CAL12_21750  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CAL12_04540  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CAL12_08165  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CAL12_19405  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CAL12_00535  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CAL12_01425  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CAL12_04410  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CAL12_08805  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CAL12_19160  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
CAL12_01455  phosphate acetyltransferase [KO:K17865] [EC:4.2.1.55]
CAL12_17765  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
CAL12_17760  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
CAL12_17755  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
CAL12_19925  catalase [KO:K03781] [EC:1.11.1.6]
CAL12_06715  catalase [KO:K03781] [EC:1.11.1.6]
CAL12_03155  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CAL12_22585  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CAL12_25930  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CAL12_13425  hypothetical protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CAL12_14440  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CAL12_08310  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CAL12_26100  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CAL12_24205  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CAL12_27815  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CAL12_15310  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CAL12_24705  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CAL12_02660  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
CAL12_02650  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
CAL12_19210  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CAL12_11695  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CAL12_11750  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CAL12_02655  glycine cleavage system protein H [KO:K02437]
CAL12_06165  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CAL12_06160  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CAL12_06305  glycerate kinase [KO:K00865] [EC:2.7.1.165]
CAL12_07835  fumarate hydratase [KO:K03779] [EC:4.2.1.32]
CAL12_07840  fumarate hydrolyase [KO:K03780] [EC:4.2.1.32]
CAL12_17850  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CAL12_14635  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CAL12_05445  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CAL12_23970  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
CAL12_19425  formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
CAL12_23960  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CAL12_23955  formate dehydrogenase [KO:K00124]
CAL12_19435  formate dehydrogenase subunit gamma [KO:K00127]
CAL12_23950  formate dehydrogenase subunit gamma [KO:K00127]
CAL12_25060  esterase [KO:K01432] [EC:3.5.1.9]
CAL12_05380  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CAL12_06110  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CAL12_03815  formamidase [KO:K01455] [EC:3.5.1.49]
CAL12_11220  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bgv00010  Glycolysis / Gluconeogenesis
bgv00020  Citrate cycle (TCA cycle)
bgv00030  Pentose phosphate pathway
bgv00053  Ascorbate and aldarate metabolism
bgv00071  Fatty acid degradation
bgv00230  Purine metabolism
bgv00250  Alanine, aspartate and glutamate metabolism
bgv00260  Glycine, serine and threonine metabolism
bgv00620  Pyruvate metabolism
bgv00710  Carbon fixation by Calvin cycle
bgv00750  Vitamin B6 metabolism
bgv00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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