KEGG   PATHWAY: bhj00020
Entry
bhj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Benincasa hispida (wax gourd)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bhj00020  Citrate cycle (TCA cycle)
bhj00020

Module
bhj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bhj00020]
bhj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bhj00020]
bhj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bhj00020]
Other DBs
GO: 0006099
Organism
Benincasa hispida (wax gourd) [GN:bhj]
Gene
120086860  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
120087617  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
120092487  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
120071886  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
120075649  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
120075796  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
120073411  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
120077780  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
120067122  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
120080113  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
120073457  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120073744  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
120074358  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
120089272  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120079669  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
120081299  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
120085665  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
120068211  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
120068470  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
120082158  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
120083637  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120068435  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120086493  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
120067581  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
120086065  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
120089679  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
120092914  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
120070819  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
120070211  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
120071589  malate dehydrogenase, chloroplastic-like isoform X1 [KO:K00026] [EC:1.1.1.37]
120074607  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
120077144  LOW QUALITY PROTEIN: malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120090920  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
120073971  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
120086378  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
120067765  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
120080781  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
120075660  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
120067922  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
120083247  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like isoform X1 [KO:K00162] [EC:1.2.4.1]
120090629  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
120081681  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
120086559  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
120075428  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bhj00010  Glycolysis / Gluconeogenesis
bhj00053  Ascorbate and aldarate metabolism
bhj00061  Fatty acid biosynthesis
bhj00062  Fatty acid elongation
bhj00071  Fatty acid degradation
bhj00190  Oxidative phosphorylation
bhj00220  Arginine biosynthesis
bhj00250  Alanine, aspartate and glutamate metabolism
bhj00280  Valine, leucine and isoleucine degradation
bhj00350  Tyrosine metabolism
bhj00470  D-Amino acid metabolism
bhj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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