KEGG   PATHWAY: bhum00020
Entry
bhum00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides humanifaecis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bhum00020  Citrate cycle (TCA cycle)
bhum00020

Module
bhum_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bhum00020]
bhum_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bhum00020]
bhum_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bhum00020]
Other DBs
GO: 0006099
Organism
Bacteroides humanifaecis [GN:bhum]
Gene
JXR92_017175  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
JXR92_017185  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JXR92_017180  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JXR92_004015  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JXR92_003090  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JXR92_010120  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JXR92_003095  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JXR92_010110  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JXR92_010105  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
JXR92_010125  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
JXR92_003520  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JXR92_003525  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JXR92_003515  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
JXR92_006780  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JXR92_000805  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JXR92_001800  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JXR92_008810  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
JXR92_011105  biotin/lipoyl-binding protein [KO:K01960] [EC:6.4.1.1]
JXR92_003135  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
JXR92_008675  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bhum00010  Glycolysis / Gluconeogenesis
bhum00053  Ascorbate and aldarate metabolism
bhum00061  Fatty acid biosynthesis
bhum00071  Fatty acid degradation
bhum00190  Oxidative phosphorylation
bhum00220  Arginine biosynthesis
bhum00250  Alanine, aspartate and glutamate metabolism
bhum00280  Valine, leucine and isoleucine degradation
bhum00350  Tyrosine metabolism
bhum00470  D-Amino acid metabolism
bhum00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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