KEGG   PATHWAY: bia00020
Entry
bia00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bizionia sp. M204
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bia00020  Citrate cycle (TCA cycle)
bia00020

Module
bia_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bia00020]
bia_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bia00020]
bia_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bia00020]
bia_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bia00020]
bia_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bia00020]
Other DBs
GO: 0006099
Organism
Bizionia sp. M204 [GN:bia]
Gene
GMA17_00860  citrate synthase [KO:K01647] [EC:2.3.3.1]
GMA17_02060  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GMA17_02255  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GMA17_14610  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GMA17_08430  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
GMA17_09375  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
GMA17_14615  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GMA17_03425  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GMA17_05550  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GMA17_04440  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GMA17_01810  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GMA17_06580  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GMA17_11690  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GMA17_06575  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GMA17_11685  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GMA17_06585  succinate dehydrogenase [KO:K00241]
GMA17_11695  succinate dehydrogenase [KO:K00241]
GMA17_05215  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GMA17_01280  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GMA17_00550  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GMA17_03225  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
GMA17_11355  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GMA17_01120  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GMA17_00085  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GMA17_01125  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bia00010  Glycolysis / Gluconeogenesis
bia00053  Ascorbate and aldarate metabolism
bia00061  Fatty acid biosynthesis
bia00071  Fatty acid degradation
bia00190  Oxidative phosphorylation
bia00220  Arginine biosynthesis
bia00250  Alanine, aspartate and glutamate metabolism
bia00280  Valine, leucine and isoleucine degradation
bia00350  Tyrosine metabolism
bia00470  D-Amino acid metabolism
bia00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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