KEGG   PATHWAY: bio00020
Entry
bio00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella inopinata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bio00020  Citrate cycle (TCA cycle)
bio00020

Module
bio_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bio00020]
bio_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bio00020]
bio_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bio00020]
bio_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bio00020]
bio_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bio00020]
Other DBs
GO: 0006099
Organism
Brucella inopinata [GN:bio]
Gene
BR141012304_11539  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
BR141012304_10467  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BR141012304_11493  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BR141012304_10800  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BR141012304_10801  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
BR141012304_20458  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BR141012304_10805  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BR141012304_11725  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BR141012304_10799  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BR141012304_10798  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BR141012304_11663  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BR141012304_10816  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BR141012304_10817  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BR141012304_10814  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BR141012304_10815  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein, putative [KO:K00242]
BR141012304_11577  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BR141012304_20757  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
BR141012304_10797  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BR141012304_10930  biotin carboxylase [KO:K01958] [EC:6.4.1.1]
BR141012304_10648  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BR141012304_11728  dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
BR141012304_11727  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BR141012304_21012  dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
BR141012304_11726  dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bio00010  Glycolysis / Gluconeogenesis
bio00053  Ascorbate and aldarate metabolism
bio00061  Fatty acid biosynthesis
bio00071  Fatty acid degradation
bio00190  Oxidative phosphorylation
bio00220  Arginine biosynthesis
bio00250  Alanine, aspartate and glutamate metabolism
bio00280  Valine, leucine and isoleucine degradation
bio00350  Tyrosine metabolism
bio00470  D-Amino acid metabolism
bio00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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