KEGG   PATHWAY: bit00020
Entry
bit00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus spizizenii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bit00020  Citrate cycle (TCA cycle)
bit00020

Module
bit_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bit00020]
bit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bit00020]
bit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bit00020]
bit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bit00020]
bit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bit00020]
Other DBs
GO: 0006099
Organism
Bacillus spizizenii [GN:bit]
Gene
BIS30_04005  citrate synthase [KO:K01647] [EC:2.3.3.1]
BIS30_01785  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
BIS30_15410  citrate synthase [KO:K01647] [EC:2.3.3.1]
BIS30_19860  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BIS30_04000  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BIS30_00215  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
BIS30_00210  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BIS30_01745  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BIS30_18120  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BIS30_14655  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BIS30_18905  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
BIS30_18900  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BIS30_03635  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
BIS30_03630  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
BIS30_03640  succinate dehydrogenase [KO:K00241]
BIS30_06120  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BIS30_02645  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BIS30_03995  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BIS30_18255  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BIS30_04660  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BIS30_18105  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
BIS30_18110  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
BIS30_18115  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bit00010  Glycolysis / Gluconeogenesis
bit00053  Ascorbate and aldarate metabolism
bit00061  Fatty acid biosynthesis
bit00071  Fatty acid degradation
bit00190  Oxidative phosphorylation
bit00220  Arginine biosynthesis
bit00250  Alanine, aspartate and glutamate metabolism
bit00280  Valine, leucine and isoleucine degradation
bit00350  Tyrosine metabolism
bit00470  D-Amino acid metabolism
bit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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