KEGG   PATHWAY: bja00630
Entry
bja00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium diazoefficiens USDA 110
Class
Metabolism; Carbohydrate metabolism
Pathway map
bja00630  Glyoxylate and dicarboxylate metabolism
bja00630

Module
bja_M00012  Glyoxylate cycle [PATH:bja00630]
bja_M00621  Glycine cleavage system [PATH:bja00630]
bja_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bja00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium diazoefficiens USDA 110 [GN:bja]
Gene
blr2455  blr2455; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
bll7367  bll7367; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
blr0573  blr0573; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
blr3958  blr3958; ORF_ID:blr3958; putative acetyl-coenzyme A synthetase (EC 6.2.1.1) [KO:K01895] [EC:6.2.1.1]
bll1474  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
bll0456  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
bll6374  bll6374; ORF_ID:bll6374; hypothetical protein [KO:K01647] [EC:2.3.3.1]
blr0183  cis; citrate synthase [KO:K01647] [EC:2.3.3.1]
blr4839  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
bll0182  cisZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
bll0466  acnA; aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
bll7819  bll7819; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bll0226  atoB; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bll7400  bll7400; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bll3949  bll3949; acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
blr3724  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
blr2427  blr2427; ORF_ID:blr2427; probable 3-ketoacyl-CoA thiolase (EC 2.3.1.16) [KO:K00626] [EC:2.3.1.9]
bll2936  bll2936; ORF_ID:bll2936; hypothetical protein [KO:K00626] [EC:2.3.1.9]
bll5335  bll5335; ORF_ID:bll5335; putative thiolase [KO:K00626] [EC:2.3.1.9]
bll6176  bll6176; acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
blr7806  blr7806; ORF_ID:blr7806; putative beta-ketoadipyl CoA thiolase (EC 2.3.1.-) [KO:K00626] [EC:2.3.1.9]
blr1159  blr1159; acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
blr3924  blr3924; acetyl CoA synthase [KO:K00626] [EC:2.3.1.9]
bll0225  phbB; acetoacetyl CoA reductase [KO:K00023] [EC:1.1.1.36]
blr3725  phbB; acetoacetyl CoA reductase [KO:K00023] [EC:1.1.1.36]
blr3306  blr3306; ORF_ID:blr3306; putative acyl dehydratase [KO:K17865] [EC:4.2.1.55]
bll4901  bll4901; ORF_ID:bll4901; hypothetical protein [KO:K05606] [EC:5.1.99.1]
bll5267  pccA; propionyl-coenzyme A carboxylase alpha polypeptide [KO:K01965] [EC:6.4.1.3]
bll5356  bll5356; propionyl-CoA carboxylase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
bll3054  mutA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
bll3056  mutA; ORF_ID:bll3056; probable methylmalonyl-CoA mutase small subunit (EC 5.4.99.2) [KO:K01847] [EC:5.4.99.2]
bll7543  glcD; glycolate oxidase subunit [KO:K00104] [EC:1.1.99.14]
bll7541  glcE; glycolate oxidase subunit [KO:K11472] [EC:1.1.99.14]
bll7540  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
bll0292  bll0292; ORF_ID:bll0292; putative sulfur regulated plasmid-encoded protein precursor [KO:K03781] [EC:1.11.1.6]
blr6251  blr6251; ORF_ID:blr6251; hypothetical protein [KO:K03781] [EC:1.11.1.6]
bll0766  bll0766; ORF_ID:bll0766; probable dehydrogenase [KO:K00015] [EC:1.1.1.26]
bll6710  bll6710; ORF_ID:bll6710; probable dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
blr7172  blr7172; 2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
bll3754  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
bll0498  bll0498; ORF_ID:bll0498; putative phosphoglycolate phosphatase (EC 3.1.3.18) [KO:K01091] [EC:3.1.3.18]
blr4704  blr4704; ORF_ID:blr4704; putative phosphoglycolate phosphatase (EC 3.1.3.18) [KO:K01091] [EC:3.1.3.18]
blr5147  blr5147; ORF_ID:blr5147; hypothetical protein [KO:K01091] [EC:3.1.3.18]
blr2585  cbbL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
blr2586  cbbS; ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit [KO:K01602] [EC:4.1.1.39]
bll6037  bll6037; ORF_ID:bll6037; probable SgaA serine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
bll6039  bll6039; ORF_ID:bll6039; probable SgaA serine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
blr0373  blr0373; hypothetical aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
blr4949  glnA; glutamine synthetase I [KO:K01915] [EC:6.3.1.2]
blr4169  glnII; glutamine synthetase II [KO:K01915] [EC:6.3.1.2]
blr4835  glnA; glutamine synthetase I [KO:K01915] [EC:6.3.1.2]
bll1069  bll1069; ORF_ID:bll1069; probable glutamine synthetase (EC 6.3.1.2) [KO:K01915] [EC:6.3.1.2]
blr2084  blr2084; ORF_ID:blr2084; putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
bll5033  glyA; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
bll5912  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
blr5753  gcvP; glycine cleavage system protein P2 [KO:K00281] [EC:1.4.4.2]
blr5751  gcvT; glycine cleavage system component T [KO:K00605] [EC:2.1.2.10]
bll0449  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bll4778  bll4778; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
blr3722  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
blr6334  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
blr5752  gcvH; glycine cleavage system component H [KO:K02437]
blr3166  gcl; ORF_ID:blr3166; putative glyoxylate carboligase protein [KO:K01608] [EC:4.1.1.47]
blr3167  hyi; ORF_ID:blr3167; putative hydroxypyruvate isomerase protein [KO:K01816] [EC:5.3.1.22]
blr3168  blr3168; oxidoredutase [KO:K00042] [EC:1.1.1.60]
blr7830  blr7830; hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
blr6570  blr6570; ORF_ID:blr6570; probable dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
blr2916  blr2916; tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
blr3923  kdgA; KHG-KDPG bifunctional aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
blr0281  blr0281; oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
bsl3134  bsl3134; ORF_ID:bsl3134; putative NAD-dependent formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
blr2317  blr2317; formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
bll5478  bll5478; ORF_ID:bll5478; similar to formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
bll3136  fdhF; formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
blr2316  blr2316; ORF_ID:blr2316; probable NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) [KO:K22515] [EC:1.17.1.9]
bll5476  bll5476; formate dehydrogenase iron-sulfur subunit [KO:K00124]
bll3137  nuoF; NADH dehydrogenase I chain F [KO:K00124]
bll5475  bll5475; ORF_ID:bll5475; putative formate dehydrogenase (EC 1.2.1.2) [KO:K00127]
bll3138  nuoE; NADH dehydrogenase I chain E [KO:K00127]
bll5955  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
blr0972  blr0972; amidase [KO:K01455] [EC:3.5.1.49]
blr6144  blr6144; ORF_ID:blr6144; putative aliphatic amidase (EC 3.5.1.4) [KO:K01455] [EC:3.5.1.49]
bll3157  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
bll3156  bll3156; ORF_ID:bll3156; probable formyl-CoA transferase (EC 2.8.3.-) [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bja00010  Glycolysis / Gluconeogenesis
bja00020  Citrate cycle (TCA cycle)
bja00030  Pentose phosphate pathway
bja00053  Ascorbate and aldarate metabolism
bja00071  Fatty acid degradation
bja00230  Purine metabolism
bja00250  Alanine, aspartate and glutamate metabolism
bja00260  Glycine, serine and threonine metabolism
bja00620  Pyruvate metabolism
bja00710  Carbon fixation by Calvin cycle
bja00750  Vitamin B6 metabolism
bja00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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