KEGG   PATHWAY: bkw00020
Entry
bkw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halalkalibacter krulwichiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bkw00020  Citrate cycle (TCA cycle)
bkw00020

Module
bkw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bkw00020]
bkw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bkw00020]
bkw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bkw00020]
bkw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bkw00020]
bkw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bkw00020]
Other DBs
GO: 0006099
Organism
Halalkalibacter krulwichiae [GN:bkw]
Gene
BkAM31D_18660  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
BkAM31D_23540  citB_3; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BkAM31D_13870  citB_1; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BkAM31D_18655  icd_2; Isocitrate dehydrogenase, NADP [KO:K00031] [EC:1.1.1.42]
BkAM31D_07875  icd_1; Isocitrate dehydrogenase, NADP [KO:K00031] [EC:1.1.1.42]
BkAM31D_13340  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BkAM31D_13335  odhB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BkAM31D_15650  pdhD_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BkAM31D_07550  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BkAM31D_16795  pdhD_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BkAM31D_14340  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BkAM31D_14830  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BkAM31D_14835  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BkAM31D_18380  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BkAM31D_18375  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BkAM31D_18385  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
BkAM31D_03495  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K01676] [EC:4.2.1.2]
BkAM31D_10380  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BkAM31D_18650  mdh_3; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BkAM31D_02825  ldh1_1; L-lactate dehydrogenase 1 [KO:K00024] [EC:1.1.1.37]
BkAM31D_21940  ldhA; L-lactate dehydrogenase 1 [KO:K00024] [EC:1.1.1.37]
BkAM31D_25065  mqo1; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
BkAM31D_15520  cfiB_2; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
BkAM31D_19215  pckA; Phosphoenolpyruvate carboxykinase, ATP [KO:K01610] [EC:4.1.1.49]
BkAM31D_15665  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BkAM31D_15660  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BkAM31D_07545  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BkAM31D_15655  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bkw00010  Glycolysis / Gluconeogenesis
bkw00053  Ascorbate and aldarate metabolism
bkw00061  Fatty acid biosynthesis
bkw00071  Fatty acid degradation
bkw00190  Oxidative phosphorylation
bkw00220  Arginine biosynthesis
bkw00250  Alanine, aspartate and glutamate metabolism
bkw00280  Valine, leucine and isoleucine degradation
bkw00350  Tyrosine metabolism
bkw00470  D-Amino acid metabolism
bkw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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