KEGG   PATHWAY: bmed00630
Entry
bmed00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Brevundimonas mediterranea
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmed00630  Glyoxylate and dicarboxylate metabolism
bmed00630

Module
bmed_M00012  Glyoxylate cycle [PATH:bmed00630]
bmed_M00621  Glycine cleavage system [PATH:bmed00630]
bmed_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bmed00630]
Other DBs
GO: 0046487 0043648
Organism
Brevundimonas mediterranea [GN:bmed]
Gene
GYM46_02960  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
GYM46_15945  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
GYM46_10390  malate synthase G [KO:K01638] [EC:2.3.3.9]
GYM46_09580  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GYM46_05890  citrate synthase [KO:K01647] [EC:2.3.3.1]
GYM46_14855  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GYM46_09485  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GYM46_05695  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GYM46_07620  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GYM46_09650  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GYM46_10895  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GYM46_11280  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
GYM46_12005  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
GYM46_03200  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
GYM46_03215  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
GYM46_03225  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
GYM46_03205  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
GYM46_03210  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
GYM46_08100  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
GYM46_15890  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
GYM46_15410  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GYM46_16180  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
GYM46_12785  aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
GYM46_12780  glycine dehydrogenase subunit 2 [KO:K00283] [EC:1.4.4.2]
GYM46_12795  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GYM46_02235  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GYM46_07185  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GYM46_07770  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GYM46_08810  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GYM46_16315  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GYM46_12790  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GYM46_04535  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GYM46_03705  alpha/beta fold hydrolase [KO:K01432] [EC:3.5.1.9]
GYM46_03455  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
GYM46_15840  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bmed00010  Glycolysis / Gluconeogenesis
bmed00020  Citrate cycle (TCA cycle)
bmed00030  Pentose phosphate pathway
bmed00053  Ascorbate and aldarate metabolism
bmed00071  Fatty acid degradation
bmed00230  Purine metabolism
bmed00250  Alanine, aspartate and glutamate metabolism
bmed00260  Glycine, serine and threonine metabolism
bmed00620  Pyruvate metabolism
bmed00710  Carbon fixation by Calvin cycle
bmed00750  Vitamin B6 metabolism
bmed00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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