KEGG   PATHWAY: bmg00020
Entry
bmg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella melitensis M5-90
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmg00020  Citrate cycle (TCA cycle)
bmg00020

Module
bmg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bmg00020]
bmg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmg00020]
bmg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmg00020]
bmg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmg00020]
bmg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmg00020]
Other DBs
GO: 0006099
Organism
Brucella melitensis M5-90 [GN:bmg]
Gene
BM590_A1148  citrate synthase I [KO:K01647] [EC:2.3.3.1]
BM590_A0091  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BM590_A1197  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BM590_A1910  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BM590_A1909  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BM590_B0499  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BM590_A1905  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BM590_A1124  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BM590_A1911  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BM590_A1912  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BM590_A1056  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BM590_A1887  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BM590_A1886  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BM590_A1889  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BM590_A1888  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BM590_A0967  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
BM590_B0188  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BM590_A1913  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
BM590_A1774  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BM590_A2075  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BM590_A1127  dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
BM590_A1126  pyruvate dehydrogenase E1 component [KO:K00162] [EC:1.2.4.1]
BM590_B0036  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BM590_A1125  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bmg00010  Glycolysis / Gluconeogenesis
bmg00053  Ascorbate and aldarate metabolism
bmg00061  Fatty acid biosynthesis
bmg00071  Fatty acid degradation
bmg00190  Oxidative phosphorylation
bmg00220  Arginine biosynthesis
bmg00250  Alanine, aspartate and glutamate metabolism
bmg00280  Valine, leucine and isoleucine degradation
bmg00350  Tyrosine metabolism
bmg00470  D-Amino acid metabolism
bmg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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