KEGG   PATHWAY: bmi00020
Entry
bmi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella melitensis ATCC 23457
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmi00020  Citrate cycle (TCA cycle)
bmi00020

Module
bmi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmi00020]
bmi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmi00020]
bmi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmi00020]
bmi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmi00020]
Other DBs
GO: 0006099
Organism
Brucella melitensis ATCC 23457 [GN:bmi]
Gene
BMEA_A1192  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BMEA_A0098  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BMEA_A1243  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BMEA_A1980  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BMEA_A1979  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BMEA_B0500  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMEA_A1171  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMEA_A1975  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMEA_A1982  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BMEA_A1983  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BMEA_A1099  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BMEA_A1956  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BMEA_A1955  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BMEA_A1958  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BMEA_A1957  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BMEA_A0995  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
BMEA_B0192  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BMEA_A1984  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
BMEA_A1831  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BMEA_A1174  pdhA; dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
BMEA_A1173  Pyruvate dehydrogenase E1 component [KO:K00162] [EC:1.2.4.1]
BMEA_B0035  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BMEA_A1172  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bmi00010  Glycolysis / Gluconeogenesis
bmi00053  Ascorbate and aldarate metabolism
bmi00061  Fatty acid biosynthesis
bmi00071  Fatty acid degradation
bmi00190  Oxidative phosphorylation
bmi00220  Arginine biosynthesis
bmi00250  Alanine, aspartate and glutamate metabolism
bmi00280  Valine, leucine and isoleucine degradation
bmi00350  Tyrosine metabolism
bmi00470  D-Amino acid metabolism
bmi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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