KEGG   PATHWAY: bmoj00020
Entry
bmoj00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus mojavensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmoj00020  Citrate cycle (TCA cycle)
bmoj00020

Module
bmoj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bmoj00020]
bmoj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmoj00020]
bmoj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmoj00020]
bmoj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmoj00020]
bmoj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmoj00020]
Other DBs
GO: 0006099
Organism
Bacillus mojavensis [GN:bmoj]
Gene
HC660_10020  citA; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
HC660_22940  mmgD; 2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
HC660_27920  citZ; Citrate synthase II [KO:K01647] [EC:2.3.3.1]
HC660_18530  citB; Aconitate hydratase / 2-methylisocitrate dehydratase [KO:K01681] [EC:4.2.1.3]
HC660_27910  icd; Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
HC660_20000  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HC660_19990  odhB; Dihydrolipoamide succinyltransferase component (E2-subunit) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
HC660_08500  acoL; Dihydrolipoamide dehydrogenase of acetoin dehydrogenase [KO:K00382] [EC:1.8.1.4]
HC660_15260  pdhD; Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
HC660_22860  lpdV; Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase E3 subunit [KO:K00382] [EC:1.8.1.4]
HC660_16740  sucD; Succinyl-CoA ligase (ADP-forming) alpha chain [KO:K01902] [EC:6.2.1.5]
HC660_16730  sucC; Succinyl-CoA ligase (ADP-forming) beta chain [KO:K01903] [EC:6.2.1.5]
HC660_27220  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HC660_27210  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
HC660_27230  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
HC660_24740  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
HC660_31860  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
HC660_27900  mdh; Malate dehydrogenase (NAD-dependent) [KO:K00024] [EC:1.1.1.37]
HC660_15510  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HC660_29200  pckA; Phosphoenolpyruvate carboxykinase (ATP-dependent) [KO:K01610] [EC:4.1.1.49]
HC660_15230  pdhA; Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
HC660_15240  pdhB; Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
HC660_08490  acoC; Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
HC660_15250  pdhC; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bmoj00010  Glycolysis / Gluconeogenesis
bmoj00053  Ascorbate and aldarate metabolism
bmoj00061  Fatty acid biosynthesis
bmoj00071  Fatty acid degradation
bmoj00190  Oxidative phosphorylation
bmoj00220  Arginine biosynthesis
bmoj00250  Alanine, aspartate and glutamate metabolism
bmoj00280  Valine, leucine and isoleucine degradation
bmoj00350  Tyrosine metabolism
bmoj00470  D-Amino acid metabolism
bmoj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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