KEGG   PATHWAY: bmor04142
Entry
bmor04142                   Pathway                                
Name
Lysosome - Bombyx mori (domestic silkworm)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
Pathway map
bmor04142  Lysosome
bmor04142

Other DBs
GO: 0005764
Organism
Bombyx mori (domestic silkworm) [GN:bmor]
Gene
100037422  [KO:K02147]
100037424  [KO:K02145] [EC:7.1.2.2]
100038345  GlcNAcase1; beta-N-acetylglucosaminidase 1 precursor [KO:K12373] [EC:3.2.1.52]
100101154  [KO:K13443]
100101196  GlcNAcase2; beta-N-acetylglucosaminidase 2 precursor [KO:K12373] [EC:3.2.1.52]
100233163  Chc; clathrin heavy chain [KO:K04646]
100271726  oxr1; oxygen resistance gene 1 [KO:K25442]
100302607  Gal; beta-galactosidase [KO:K12309] [EC:3.2.1.23]
100328579  BLOS2; biogenesis of lysosome-related organelles complex 1 subunit 2 [KO:K16750]
100379191  RGPC; ras-related GTP-binding protein [KO:K16186]
100431179  TOR1; target of rapamycin isoform 1 [KO:K07203] [EC:2.7.11.1]
100431180  TOR2; target of rapamycin isoform 2 [KO:K07203] [EC:2.7.11.1]
100463495  rptor; regulatory-associated protein of TOR [KO:K07204]
100500932  [KO:K12301]
101735387  [KO:K14209]
101735592  [KO:K20403]
101735594  [KO:K01197] [EC:3.2.1.35]
101735624  [KO:K20822]
101735961  [KO:K19363]
101736031  [KO:K01204] [EC:3.2.1.49]
101736087  [KO:K14995]
101736644  [KO:K12311] [EC:3.2.1.24]
101736837  [KO:K13443]
101736859  [KO:K01195] [EC:3.2.1.31]
101736893  [KO:K19363]
101736896  [KO:K13443]
101736898  [KO:K02154]
101736903  [KO:K01074] [EC:3.1.2.22]
101736905  [KO:K12316] [EC:3.2.1.20]
101736916  [KO:K18466]
101737012  [KO:K12393]
101737171  [KO:K20187]
101737242  [KO:K01052] [EC:3.1.1.13]
101737295  [KO:K12301]
101737372  [KO:K01052] [EC:3.1.1.13]
101737423  [KO:K01565] [EC:3.10.1.1]
101737438  [KO:K12301]
101737480  [KO:K01135] [EC:3.1.6.12]
101737544  [KO:K01135] [EC:3.1.6.12]
101737626  [KO:K01052] [EC:3.1.1.13]
101737653  [KO:K20820]
101737683  [KO:K18468]
101737708  [KO:K20184]
101737816  [KO:K06129] [EC:3.1.1.5]
101737845  [KO:K05016]
101737859  [KO:K01052] [EC:3.1.1.13]
101737902  [KO:K01135] [EC:3.1.6.12]
101737942  [KO:K14209]
101737991  [KO:K19525]
101738047  [KO:K20183]
101738075  [KO:K14209]
101738141  [KO:K02154]
101738269  [KO:K20180]
101738297  [KO:K23282]
101738631  [KO:K12404]
101738635  [KO:K04994]
101738668  [KO:K08509]
101738761  [KO:K12311] [EC:3.2.1.24]
101738899  [KO:K19363]
101738907  [KO:K06497]
101739036  [KO:K01074] [EC:3.1.2.22]
101739181  [KO:K16896]
101739224  [KO:K15014]
101739402  [KO:K01052] [EC:3.1.1.13]
101739513  [KO:K11824]
101739546  [KO:K01052] [EC:3.1.1.13]
101739638  [KO:K20818]
101739644  [KO:K08515]
101739762  [KO:K12399]
101740133  [KO:K20189]
101740308  [KO:K02153]
101740461  [KO:K12398]
101740485  [KO:K14410] [EC:3.1.3.2]
101740545  [KO:K19363]
101740612  [KO:K20181]
101740705  [KO:K20179]
101740835  [KO:K03662]
101740876  [KO:K12392]
101740945  [KO:K08266]
101740969  [KO:K19363]
101741150  [KO:K20463]
101741196  [KO:K20821]
101741318  [KO:K13444] [EC:1.8.3.7]
101741392  [KO:K01201] [EC:3.2.1.45]
101741653  [KO:K01374] [EC:3.4.22.42]
101741710  [KO:K14209]
101741798  [KO:K01192] [EC:3.2.1.25]
101741858  [KO:K14209]
101741883  [KO:K12301]
101741915  [KO:K03662]
101741989  [KO:K15014]
101742059  [KO:K10532] [EC:2.3.1.78]
101742149  [KO:K12385]
101742239  [KO:K12391]
101742270  [KO:K19026]
101742351  [KO:K10532] [EC:2.3.1.78]
101742496  [KO:K01201] [EC:3.2.1.45]
101742516  [KO:K02154]
101742640  [KO:K01201] [EC:3.2.1.45]
101742661  [KO:K20399]
101742709  [KO:K14209]
101742786  [KO:K01201] [EC:3.2.1.45]
101742843  [KO:K13443]
101742921  [KO:K16185]
101742988  [KO:K24155]
101743102  [KO:K20182]
101743104  [KO:K24628]
101743137  [KO:K23863]
101743168  [KO:K12397]
101743338  [KO:K19027]
101743409  [KO:K12396]
101743487  [KO:K20188]
101743490  [KO:K01206] [EC:3.2.1.51]
101743573  [KO:K12311] [EC:3.2.1.24]
101743758  [KO:K06497]
101743908  [KO:K06497]
101743974  [KO:K20819]
101744032  [KO:K13443]
101744073  [KO:K04370]
101744138  [KO:K12316] [EC:3.2.1.20]
101744508  [KO:K20456]
101744593  [KO:K14209]
101744646  [KO:K11827]
101744744  [KO:K14209]
101744751  [KO:K22913] [EC:3.1.3.-]
101744799  [KO:K01136] [EC:3.1.6.13]
101744814  [KO:K00921] [EC:2.7.1.150]
101744890  [KO:K12350] [EC:3.1.4.12]
101744899  [KO:K12307]
101744996  [KO:K05648]
101745028  [KO:K12373] [EC:3.2.1.52]
101745131  [KO:K06497]
101745219  [KO:K20174]
101745374  [KO:K11826]
101745433  [KO:K06528]
101745483  [KO:K13443]
101745674  [KO:K14209]
101745680  [KO:K01137] [EC:3.1.6.14]
101745705  [KO:K28774]
101745763  [KO:K20002]
101745805  [KO:K14209]
101745823  [KO:K14209]
101745899  [KO:K12301]
101745963  [KO:K14209]
101746014  [KO:K14209]
101746043  [KO:K12301]
101746186  [KO:K12301]
101746265  [KO:K28455]
101746575  [KO:K01158] [EC:3.1.22.1]
101746583  [KO:K12350] [EC:3.1.4.12]
101746585  [KO:K19525]
101746615  [KO:K12301]
101746782  [KO:K02153]
101746805  [KO:K12384]
101746899  [KO:K27947]
101746907  [KO:K14209]
101746912  [KO:K16344]
101747035  [KO:K08491]
101747132  [KO:K14209]
101747179  [KO:K14209]
101747227  [KO:K12386]
105841262  [KO:K02154]
105841453  [KO:K14209]
105841519  [KO:K01052] [EC:3.1.1.13]
105841814  [KO:K20186]
105842703  [KO:K14410] [EC:3.1.3.2]
110384698  [KO:K01205] [EC:3.2.1.50]
110384750  [KO:K24738]
110386644  [KO:K19363]
119628382  [KO:K19363]
119629359  [KO:K19363]
119629863  [KO:K12385]
119629864  [KO:K12385]
134198672  [KO:K20174]
134199220  [KO:K01052] [EC:3.1.1.13]
134199221  [KO:K01052] [EC:3.1.1.13]
134199230  [KO:K01052] [EC:3.1.1.13]
692367  Sap-r; saposin-related precursor [KO:K12382]
692390  [KO:K01363] [EC:3.4.22.1]
692451  Pi-t1; inorganic phosphate transporter 1 [KO:K12301]
692592  [KO:K12387]
692647  GlcNAcase3; beta-N-acetylglucosaminidase 3 precursor [KO:K12373] [EC:3.2.1.52]
692685  [KO:K13443]
692768  CatD; cathepsin D precursor [KO:K01379] [EC:3.4.23.5]
692814  [KO:K20185]
692828  [KO:K02148]
692847  [KO:K06497]
692858  [KO:K07955]
692859  [KO:K03661]
692921  AP1S; adaptin [KO:K12394]
692984  [KO:K02149]
692985  [KO:K02152]
693022  [KO:K01052] [EC:3.1.1.13]
693031  Bcp; fibroinase precursor [KO:K01365] [EC:3.4.22.15]
693032  [KO:K12373] [EC:3.2.1.52]
693101  [KO:K06497]
693106  [KO:K20398]
732902  Rab7; Rab7 [KO:K07897]
732926  [KO:K06497]
732966  [KO:K02146]
732987  [KO:K02151]
732990  [KO:K02150]
732993  [KO:K13443]
733031  [KO:K02144]
733048  [KO:K18467]
733071  [KO:K08515]
733120  [KO:K02149]
751092  [KO:K01444] [EC:3.5.1.26]
778463  VATPc; vacuolar H+ ATP synthase 16 kDa proteolipid subunit [KO:K02155]
Compound
C00002  ATP
C00008  ADP
Reference
  Authors
Eskelinen EL, Tanaka Y, Saftig P
  Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
  Journal
Trends Cell Biol 13:137-45 (2003)
DOI:10.1016/S0962-8924(03)00005-9
Reference
PMID:1883197
  Authors
Neufeld EF
  Title
Lysosomal storage diseases.
  Journal
Annu Rev Biochem 60:257-80 (1991)
DOI:10.1146/annurev.bi.60.070191.001353
Reference
PMID:2943218
  Authors
von Figura K, Hasilik A
  Title
Lysosomal enzymes and their receptors.
  Journal
Annu Rev Biochem 55:167-93 (1986)
DOI:10.1146/annurev.bi.55.070186.001123
Reference
  Authors
Janvier K, Bonifacino JS
  Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
  Journal
Mol Biol Cell 16:4231-42 (2005)
DOI:10.1091/mbc.E05-03-0213
Reference
  Authors
Vergarajauregui S, Puertollano R
  Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
  Journal
Autophagy 4:832-4 (2008)
DOI:10.4161/auto.6567
Reference
  Authors
Jaskolka MC, Winkley SR, Kane PM
  Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
  Journal
Front Cell Dev Biol 9:698190 (2021)
DOI:10.3389/fcell.2021.698190
Reference
  Authors
Majdoul S, Compton AA
  Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
  Journal
Nat Rev Immunol 22:339-352 (2022)
DOI:10.1038/s41577-021-00626-8
Reference
  Authors
Saftig P, Klumperman J
  Title
Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function.
  Journal
Nat Rev Mol Cell Biol 10:623-35 (2009)
DOI:10.1038/nrm2745
Reference
  Authors
Savini M, Zhao Q, Wang MC
  Title
Lysosomes: Signaling Hubs for Metabolic Sensing and Longevity.
  Journal
Trends Cell Biol 29:876-887 (2019)
DOI:10.1016/j.tcb.2019.08.008
Reference
  Authors
Meyer-Schwesinger C
  Title
Lysosome function in glomerular health and disease.
  Journal
Cell Tissue Res 385:371-392 (2021)
DOI:10.1007/s00441-020-03375-7
Reference
  Authors
Allemailem KS, Almatroudi A, Alrumaihi F, Almatroodi SA, Alkurbi MO, Basfar GT, Rahmani AH, Khan AA
  Title
Novel Approaches of Dysregulating Lysosome Functions in Cancer Cells by Specific Drugs and Its Nanoformulations: A Smart Approach of Modern Therapeutics.
  Journal
Int J Nanomedicine 16:5065-5098 (2021)
DOI:10.2147/IJN.S321343
Reference
  Authors
Zhang W, Yang X, Li Y, Yu L, Zhang B, Zhang J, Cho WJ, Venkatarangan V, Chen L, Burugula BB, Bui S, Wang Y, Duan C, Kitzman JO, Li M
  Title
GCAF(TMEM251) regulates lysosome biogenesis by activating the mannose-6-phosphate pathway.
  Journal
Nat Commun 13:5351 (2022)
DOI:10.1038/s41467-022-33025-1
Reference
  Authors
Liu Q, Wang W, Xu L, Zhang Q, Wang H
  Title
The host mannose-6-phosphate pathway and viral infection.
  Journal
Front Cell Infect Microbiol 14:1349221 (2024)
DOI:10.3389/fcimb.2024.1349221
Reference
  Authors
He Y, Fan Y, Ahmadpoor X, Wang Y, Li ZA, Zhu W, Lin H
  Title
Targeting lysosomal quality control as a therapeutic strategy against aging and diseases.
  Journal
Med Res Rev 44:2472-2509 (2024)
DOI:10.1002/med.22047
Reference
  Authors
Radulovic M, Yang C, Stenmark H
  Title
Lysosomal membrane homeostasis and its importance in physiology and disease.
  Journal
Nat Rev Mol Cell Biol 27:71-87 (2026)
DOI:10.1038/s41580-025-00873-w
Reference
  Authors
Watson ET, Wegeng WR, Aravani S, Ernst AM, von Blume J
  Title
Mechanistic insights into cargo sorting and export from the Golgi apparatus.
  Journal
Nat Rev Mol Cell Biol 26:940-956 (2025)
DOI:10.1038/s41580-025-00907-3
Related
pathway
bmor00511  Other glycan degradation
bmor00531  Glycosaminoglycan degradation
bmor04130  SNARE interactions in vesicular transport
bmor04140  Autophagy - animal
bmor04144  Endocytosis
bmor04145  Phagosome
bmor04150  mTOR signaling pathway
bmor04620  Toll-like receptor signaling pathway
KO pathway
ko04142   

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