KEGG   PATHWAY: bnu00020
Entry
bnu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Bandiella numerosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bnu00020  Citrate cycle (TCA cycle)
bnu00020

Module
bnu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bnu00020]
bnu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bnu00020]
bnu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bnu00020]
bnu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bnu00020]
Other DBs
GO: 0006099
Organism
Candidatus Bandiella numerosa [GN:bnu]
Gene
N3Z17_00185  citrate synthase [KO:K01647] [EC:2.3.3.1]
N3Z17_01370  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
N3Z17_00865  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
N3Z17_00450  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
N3Z17_00445  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
N3Z17_00440  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N3Z17_00510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N3Z17_02445  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
N3Z17_02450  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N3Z17_02555  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N3Z17_01815  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N3Z17_02545  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
N3Z17_02550  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
N3Z17_05320  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
N3Z17_00645  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
N3Z17_01055  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
N3Z17_01065  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
N3Z17_00515  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bnu00010  Glycolysis / Gluconeogenesis
bnu00061  Fatty acid biosynthesis
bnu00190  Oxidative phosphorylation
bnu00220  Arginine biosynthesis
bnu00250  Alanine, aspartate and glutamate metabolism
bnu00280  Valine, leucine and isoleucine degradation
bnu00350  Tyrosine metabolism
bnu00470  D-Amino acid metabolism
bnu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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