KEGG   PATHWAY: bom00515
Entry
bom00515                    Pathway                                
Name
Mannose type O-glycan biosynthesis - Bos mutus (wild yak)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
bom00515  Mannose type O-glycan biosynthesis
bom00515

Module
bom_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:bom00515]
Other DBs
GO: 0035269
Organism
Bos mutus (wild yak) [GN:bom]
Gene
102279725  POMT2; protein O-mannosyltransferase 2 [KO:K00728] [EC:2.4.1.109]
102286979  POMT1; protein O-mannosyltransferase 1 [KO:K00728] [EC:2.4.1.109]
102281527  POMGNT1; protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [KO:K09666] [EC:2.4.1.-]
102269762  B4GALT1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
102283249  B4GALT2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
102273575  B4GALT3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
102284552  ST3GAL3; ST3 beta-galactoside alpha-2,3-sialyltransferase 3 [KO:K00781] [EC:2.4.3.6]
102265083  B3GAT1; beta-1,3-glucuronyltransferase 1 [KO:K00735] [EC:2.4.1.135]
102276804  B3GAT2; beta-1,3-glucuronyltransferase 2 [KO:K10157] [EC:2.4.1.135]
102282806  CHST10; carbohydrate sulfotransferase 10 [KO:K09674] [EC:2.8.2.-]
102265797  FUT9; fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
102280084  FUT4; fucosyltransferase 4 [KO:K07632] [EC:2.4.1.-]
102283069  MGAT5B; mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B [KO:K09661] [EC:2.4.1.-]
102278967  POMGNT2; protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [KO:K18207] [EC:2.4.1.312]
102280720  B3GALNT2; beta-1,3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
102270881  POMK; protein-O-mannose kinase [KO:K17547] [EC:2.7.1.183]
102267591  ISPD; isoprenoid synthase domain containing [KO:K21031] [EC:2.7.7.40]
102281218  FKTN; fukutin [KO:K19872] [EC:2.7.8.-]
102285743  FKRP; fukutin related protein [KO:K19873] [EC:2.7.8.-]
102280602  TMEM5; transmembrane protein 5 [KO:K21052] [EC:2.4.2.61]
102278081  B4GAT1; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
102276375  LARGE1; LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
102270818  LARGE2; LARGE xylosyl- and glucuronyltransferase 2 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
bom00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

DBGET integrated database retrieval system