KEGG   PATHWAY: bpan00020
Entry
bpan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus paranthracis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpan00020  Citrate cycle (TCA cycle)
bpan00020

Module
bpan_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpan00020]
bpan_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpan00020]
bpan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpan00020]
bpan_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpan00020]
bpan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpan00020]
Other DBs
GO: 0006099
Organism
Bacillus paranthracis [GN:bpan]
Gene
NLJ82_11310  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
NLJ82_22470  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
NLJ82_17085  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NLJ82_22465  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NLJ82_06540  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NLJ82_06535  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NLJ82_13035  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLJ82_19260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLJ82_20245  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLJ82_18160  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NLJ82_18155  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NLJ82_18565  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NLJ82_18570  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NLJ82_09290  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
NLJ82_22110  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NLJ82_22105  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NLJ82_22115  sdhC; succinate dehydrogenase cytochrome B558 [KO:K00241]
NLJ82_02570  fumA; class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NLJ82_08860  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NLJ82_22460  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NLJ82_13955  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NLJ82_19145  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NLJ82_23385  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NLJ82_19275  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NLJ82_19270  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
NLJ82_13040  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
NLJ82_19265  pdhC; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpan00010  Glycolysis / Gluconeogenesis
bpan00053  Ascorbate and aldarate metabolism
bpan00061  Fatty acid biosynthesis
bpan00071  Fatty acid degradation
bpan00190  Oxidative phosphorylation
bpan00220  Arginine biosynthesis
bpan00250  Alanine, aspartate and glutamate metabolism
bpan00280  Valine, leucine and isoleucine degradation
bpan00350  Tyrosine metabolism
bpan00470  D-Amino acid metabolism
bpan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system