KEGG   PATHWAY: bpas00020
Entry
bpas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bombus pascuorum (common carder bee)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpas00020  Citrate cycle (TCA cycle)
bpas00020

Module
bpas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpas00020]
bpas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpas00020]
bpas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpas00020]
bpas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpas00020]
bpas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpas00020]
Other DBs
GO: 0006099
Organism
Bombus pascuorum (common carder bee) [GN:bpas]
Gene
132916075  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
132916088  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
132907154  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
132913318  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
132912258  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
132913361  probable aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
132907198  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
132909882  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
132910467  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
132906572  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
132905832  2-oxoglutarate dehydrogenase complex component E1-like [KO:K00164] [EC:1.2.4.2]
132908605  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
132912881  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
132914118  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
132909648  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
132912035  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
132912036  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
132913304  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
132905664  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
132905505  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
132905001  uncharacterized protein LOC132905001 [KO:K00235] [EC:1.3.5.1]
132905119  uncharacterized protein LOC132905119 [KO:K00235] [EC:1.3.5.1]
132913359  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
132916101  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
132908771  probable fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
132914003  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
132909446  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
132910622  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
132911171  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
132914025  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
132911060  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
132905036  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
132916747  uncharacterized protein LOC132916747 [KO:K00161] [EC:1.2.4.1]
132913352  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
132908423  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
132911755  uncharacterized protein LOC132911755 [KO:K00627] [EC:2.3.1.12]
132906729  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpas00010  Glycolysis / Gluconeogenesis
bpas00053  Ascorbate and aldarate metabolism
bpas00061  Fatty acid biosynthesis
bpas00062  Fatty acid elongation
bpas00071  Fatty acid degradation
bpas00190  Oxidative phosphorylation
bpas00220  Arginine biosynthesis
bpas00250  Alanine, aspartate and glutamate metabolism
bpas00280  Valine, leucine and isoleucine degradation
bpas00350  Tyrosine metabolism
bpas00470  D-Amino acid metabolism
bpas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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