KEGG   PATHWAY: bpon00020
Entry
bpon00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brevundimonas pondensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpon00020  Citrate cycle (TCA cycle)
bpon00020

Module
bpon_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpon00020]
bpon_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpon00020]
bpon_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpon00020]
Other DBs
GO: 0006099
Organism
Brevundimonas pondensis [GN:bpon]
Gene
IFE19_08955  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
IFE19_16750  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
IFE19_16740  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
IFE19_17215  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IFE19_17220  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IFE19_00555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IFE19_00780  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IFE19_08275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IFE19_17210  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IFE19_17205  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IFE19_07150  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
IFE19_16915  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IFE19_16910  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IFE19_16925  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IFE19_16920  succinate dehydrogenase [KO:K00242]
IFE19_08965  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IFE19_16940  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IFE19_06185  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
IFE19_08255  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
IFE19_08260  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
IFE19_08265  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpon00010  Glycolysis / Gluconeogenesis
bpon00053  Ascorbate and aldarate metabolism
bpon00061  Fatty acid biosynthesis
bpon00071  Fatty acid degradation
bpon00190  Oxidative phosphorylation
bpon00220  Arginine biosynthesis
bpon00250  Alanine, aspartate and glutamate metabolism
bpon00280  Valine, leucine and isoleucine degradation
bpon00350  Tyrosine metabolism
bpon00470  D-Amino acid metabolism
bpon00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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