KEGG   PATHWAY: bpp00020
Entry
bpp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella pinnipedialis B2/94
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpp00020  Citrate cycle (TCA cycle)
bpp00020

Module
bpp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpp00020]
bpp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpp00020]
bpp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpp00020]
bpp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpp00020]
bpp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpp00020]
Other DBs
GO: 0006099
Organism
Brucella pinnipedialis B2/94 [GN:bpp]
Gene
BPI_I1194  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
BPI_I94  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BPI_I1247  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BPI_I1982  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BPI_I1981  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BPI_II508  lpdA-3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPI_I1977  lpdA-2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPI_I1173  lpdA-1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPI_I1984  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BPI_I1985  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BPI_I1101  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
BPI_I1961  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BPI_I1960  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BPI_I1963  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BPI_I1962  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BPI_I997  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BPI_II190  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BPI_I1986  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BPI_I1839  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BPI_I2147  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BPI_I1176  pdhA; dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BPI_I1175  pdhB; pyruvate dehydrogenase, beta subunit [KO:K00162] [EC:1.2.4.1]
BPI_I1174  branched-chain alpha-keto acid dehydrogenase, subunit E2 [KO:K00627] [EC:2.3.1.12]
BPI_II33  acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase, putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpp00010  Glycolysis / Gluconeogenesis
bpp00053  Ascorbate and aldarate metabolism
bpp00061  Fatty acid biosynthesis
bpp00071  Fatty acid degradation
bpp00190  Oxidative phosphorylation
bpp00220  Arginine biosynthesis
bpp00250  Alanine, aspartate and glutamate metabolism
bpp00280  Valine, leucine and isoleucine degradation
bpp00350  Tyrosine metabolism
bpp00470  D-Amino acid metabolism
bpp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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