KEGG   PATHWAY: bpsn00020
Entry
bpsn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella pseudintermedia
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpsn00020  Citrate cycle (TCA cycle)
bpsn00020

Module
bpsn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpsn00020]
bpsn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpsn00020]
bpsn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpsn00020]
bpsn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpsn00020]
bpsn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpsn00020]
Other DBs
GO: 0006099
Organism
Brucella pseudintermedia [GN:bpsn]
Gene
NIK97_03170  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
NIK97_03175  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
NIK97_03485  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NIK97_09860  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NIK97_03730  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NIK97_08430  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NIK97_08425  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NIK97_03375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NIK97_08405  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NIK97_12740  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NIK97_08435  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NIK97_08440  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NIK97_02965  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
NIK97_08325  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NIK97_08320  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NIK97_08335  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NIK97_08330  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NIK97_02500  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NIK97_14885  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NIK97_08445  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NIK97_07475  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NIK97_08815  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NIK97_03395  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NIK97_03390  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
NIK97_03385  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
NIK97_17730  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpsn00010  Glycolysis / Gluconeogenesis
bpsn00053  Ascorbate and aldarate metabolism
bpsn00061  Fatty acid biosynthesis
bpsn00071  Fatty acid degradation
bpsn00190  Oxidative phosphorylation
bpsn00220  Arginine biosynthesis
bpsn00250  Alanine, aspartate and glutamate metabolism
bpsn00280  Valine, leucine and isoleucine degradation
bpsn00350  Tyrosine metabolism
bpsn00470  D-Amino acid metabolism
bpsn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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