KEGG   PATHWAY: brea00020
Entry
brea00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brevundimonas sp. AJA228-03
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brea00020  Citrate cycle (TCA cycle)
brea00020

Module
brea_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:brea00020]
brea_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brea00020]
brea_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brea00020]
Other DBs
GO: 0006099
Organism
Brevundimonas sp. AJA228-03 [GN:brea]
Gene
HZ989_10220  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HZ989_15105  citrate synthase [KO:K01647] [EC:2.3.3.1]
HZ989_00860  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HZ989_13630  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HZ989_03225  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HZ989_03230  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HZ989_01630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZ989_10105  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZ989_02950  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZ989_08530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZ989_03220  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HZ989_03215  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HZ989_04825  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
HZ989_02765  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HZ989_02770  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HZ989_02755  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HZ989_02760  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HZ989_02735  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HZ989_12275  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HZ989_10085  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HZ989_10090  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HZ989_10095  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brea00010  Glycolysis / Gluconeogenesis
brea00053  Ascorbate and aldarate metabolism
brea00061  Fatty acid biosynthesis
brea00071  Fatty acid degradation
brea00190  Oxidative phosphorylation
brea00220  Arginine biosynthesis
brea00250  Alanine, aspartate and glutamate metabolism
brea00280  Valine, leucine and isoleucine degradation
brea00350  Tyrosine metabolism
brea00470  D-Amino acid metabolism
brea00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system