KEGG   PATHWAY: broo00020
Entry
broo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brooklawnia propionicigenes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
broo00020  Citrate cycle (TCA cycle)
broo00020

Module
broo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:broo00020]
broo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:broo00020]
broo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:broo00020]
broo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:broo00020]
Other DBs
GO: 0006099
Organism
Brooklawnia propionicigenes [GN:broo]
Gene
brsh051_06690  citrate synthase [KO:K01647] [EC:2.3.3.1]
brsh051_12290  citrate synthase [KO:K01647] [EC:2.3.3.1]
brsh051_02030  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
brsh051_22620  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
brsh051_27700  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
brsh051_00520  lpdA_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
brsh051_11060  lpdA_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
brsh051_21470  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
brsh051_21460  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
brsh051_22530  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
brsh051_22520  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
brsh051_16390  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
brsh051_03810  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
brsh051_05310  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
brsh051_03800  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
brsh051_05320  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
brsh051_03820  succinate dehydrogenase cytochrome b subunit [KO:K00241]
brsh051_05300  succinate dehydrogenase cytochrome b subunit [KO:K00241]
brsh051_06480  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
brsh051_03470  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
brsh051_22600  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
brsh051_02170  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
brsh051_26820  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
brsh051_02130  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
brsh051_05750  hypothetical protein [KO:K00627] [EC:2.3.1.12]
brsh051_11050  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
brsh051_01510  hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
brsh051_11900  nifJ_1; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
brsh051_22900  nifJ_2; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
broo00010  Glycolysis / Gluconeogenesis
broo00053  Ascorbate and aldarate metabolism
broo00061  Fatty acid biosynthesis
broo00071  Fatty acid degradation
broo00190  Oxidative phosphorylation
broo00220  Arginine biosynthesis
broo00250  Alanine, aspartate and glutamate metabolism
broo00280  Valine, leucine and isoleucine degradation
broo00350  Tyrosine metabolism
broo00470  D-Amino acid metabolism
broo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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