KEGG   PATHWAY: brz00020
Entry
brz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brachybacterium vulturis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brz00020  Citrate cycle (TCA cycle)
brz00020

Module
brz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:brz00020]
brz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brz00020]
brz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:brz00020]
brz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brz00020]
Other DBs
GO: 0006099
Organism
Brachybacterium vulturis [GN:brz]
Gene
CFK38_13910  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CFK38_16555  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CFK38_12280  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CFK38_07880  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CFK38_09205  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CFK38_10720  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFK38_14940  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CFK38_14945  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CFK38_08270  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CFK38_11770  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CFK38_08265  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CFK38_11765  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CFK38_08280  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CFK38_11775  succinate dehydrogenase [KO:K00241]
CFK38_08275  succinate dehydrogenase [KO:K00242]
CFK38_07280  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CFK38_01140  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFK38_13040  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CFK38_10495  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CFK38_15315  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CFK38_10715  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
CFK38_00780  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brz00010  Glycolysis / Gluconeogenesis
brz00053  Ascorbate and aldarate metabolism
brz00061  Fatty acid biosynthesis
brz00071  Fatty acid degradation
brz00190  Oxidative phosphorylation
brz00220  Arginine biosynthesis
brz00250  Alanine, aspartate and glutamate metabolism
brz00280  Valine, leucine and isoleucine degradation
brz00350  Tyrosine metabolism
brz00470  D-Amino acid metabolism
brz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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