KEGG   PATHWAY: bse00020
Entry
bse00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus selenitireducens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bse00020  Citrate cycle (TCA cycle)
bse00020

Module
bse_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bse00020]
bse_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bse00020]
bse_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bse00020]
bse_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bse00020]
Other DBs
GO: 0006099
Organism
Bacillus selenitireducens [GN:bse]
Gene
Bsel_1353  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Bsel_1873  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Bsel_1354  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Bsel_2045  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Bsel_2044  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Bsel_2254  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bsel_1605  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bsel_2159  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bsel_1816  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bsel_2852  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bsel_2158  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bsel_1817  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bsel_2851  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bsel_2157  Pyruvate/ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
Bsel_2160  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Bsel_1731  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Bsel_1730  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Bsel_0614  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bsel_1403  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bsel_0615  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bsel_1404  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bsel_0613  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Bsel_1402  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Bsel_2052  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Bsel_1355  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Bsel_3290  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Bsel_1602  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Bsel_1603  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Bsel_0600  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Bsel_1604  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Bsel_1899  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Bsel_1900  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bse00010  Glycolysis / Gluconeogenesis
bse00053  Ascorbate and aldarate metabolism
bse00061  Fatty acid biosynthesis
bse00071  Fatty acid degradation
bse00190  Oxidative phosphorylation
bse00220  Arginine biosynthesis
bse00250  Alanine, aspartate and glutamate metabolism
bse00280  Valine, leucine and isoleucine degradation
bse00350  Tyrosine metabolism
bse00470  D-Amino acid metabolism
bse00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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