KEGG   PATHWAY: bsh00020
Entry
bsh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus subtilis subsp. subtilis 6051-HGW
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsh00020  Citrate cycle (TCA cycle)
bsh00020

Module
bsh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsh00020]
bsh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsh00020]
bsh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsh00020]
bsh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsh00020]
bsh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsh00020]
Other DBs
GO: 0006099
Organism
Bacillus subtilis subsp. subtilis 6051-HGW [GN:bsh]
Gene
BSU6051_24140  mmgD; 2-methylcitrate synthase MmgD [KO:K01647] [EC:2.3.3.1]
BSU6051_29140  citZ; citrate synthase II CitZ [KO:K01647] [EC:2.3.3.1]
BSU6051_09440  citA; citrate synthase I CitA [KO:K01647] [EC:2.3.3.1]
BSU6051_18000  citB; aconitate hydratase CitB [KO:K01681] [EC:4.2.1.3]
BSU6051_29130  icd; isocitrate dehydrogenase Icd [KO:K00031] [EC:1.1.1.42]
BSU6051_19370  odhA; 2-oxoglutarate dehydrogenase E1 subunit OdhA [KO:K00164] [EC:1.2.4.2]
BSU6051_19360  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoamide transsuccinylase E2 subunit OdhB [KO:K00658] [EC:2.3.1.61]
BSU6051_24060  lpdV; branched-chain alpha-keto acid dehydrogenase E3 subunit dihydrolipoamide dehydrogenase LpdV [KO:K00382] [EC:1.8.1.4]
BSU6051_08090  acoL; acetoin dehydrogenase E3 component dihydrolipoamide dehydrogenase AcoL [KO:K00382] [EC:1.8.1.4]
BSU6051_14610  pdhD; dihydrolipoyl dehydrogenase PdhD [KO:K00382] [EC:1.8.1.4]
BSU6051_16100  sucD; succinyl-CoA synthetase alpha subunit SucD [KO:K01902] [EC:6.2.1.5]
BSU6051_16090  sucC; succinyl-CoA synthetase beta subunit SucC [KO:K01903] [EC:6.2.1.5]
BSU6051_28440  sdhA; succinate dehydrogenase flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
BSU6051_28430  sdhB; succinate dehydrogenase iron-sulfur protein SdhB [KO:K00240] [EC:1.3.5.1]
BSU6051_28450  sdhC; succinate dehydrogenase cytochrome b558 subunit SdhC [KO:K00241]
BSU6051_33040  fumC; fumarate hydratase FumC [KO:K01679] [EC:4.2.1.2]
BSU6051_29120  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
BSU6051_14860  pycA; pyruvate carboxylase PycA [KO:K01958] [EC:6.4.1.1]
BSU6051_30560  pckA; phosphoenolpyruvate carboxykinase PckA [KO:K01610] [EC:4.1.1.49]
BSU6051_14580  pdhA; pyruvate dehydrogenase E1 alpha subunit PdhA [KO:K00161] [EC:1.2.4.1]
BSU6051_14590  pdhB; pyruvate dehydrogenase E1 beta subunit PdhB [KO:K00162] [EC:1.2.4.1]
BSU6051_08080  acoC; acetoin dehydrogenase E2 component dihydrolipoamide acetyltransferase AcoC [KO:K00627] [EC:2.3.1.12]
BSU6051_14600  pdhC; pyruvate dehydrogenase dihydrolipoamide acetyltransferase E2 subunit PdhC [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsh00010  Glycolysis / Gluconeogenesis
bsh00053  Ascorbate and aldarate metabolism
bsh00061  Fatty acid biosynthesis
bsh00071  Fatty acid degradation
bsh00190  Oxidative phosphorylation
bsh00220  Arginine biosynthesis
bsh00250  Alanine, aspartate and glutamate metabolism
bsh00280  Valine, leucine and isoleucine degradation
bsh00350  Tyrosine metabolism
bsh00470  D-Amino acid metabolism
bsh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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