KEGG   PATHWAY: bsk00020
Entry
bsk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella canis HSK A52141
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsk00020  Citrate cycle (TCA cycle)
bsk00020

Module
bsk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsk00020]
bsk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsk00020]
bsk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsk00020]
bsk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsk00020]
bsk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsk00020]
Other DBs
GO: 0006099
Organism
Brucella canis HSK A52141 [GN:bsk]
Gene
BCA52141_I3342  citrate synthase I [KO:K01647] [EC:2.3.3.1]
BCA52141_I1548  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BCA52141_I3263  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BCA52141_I2126  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BCA52141_I2128  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BCA52141_I3373  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCA52141_II0438  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BCA52141_I2136  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCA52141_I2122  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BCA52141_I2121  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BCA52141_I0040  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BCA52141_I2162  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCA52141_I2164  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
BCA52141_I2159  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
BCA52141_I2160  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BCA52141_I0186  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
BCA52141_II0939  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BCA52141_I2119  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCA52141_I2353  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BCA52141_I1860  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BCA52141_I3369  dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
BCA52141_I3370  dihydrolipoamide acetyltransferase [KO:K00162] [EC:1.2.4.1]
BCA52141_I3372  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BCA52141_II1185  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsk00010  Glycolysis / Gluconeogenesis
bsk00053  Ascorbate and aldarate metabolism
bsk00061  Fatty acid biosynthesis
bsk00071  Fatty acid degradation
bsk00190  Oxidative phosphorylation
bsk00220  Arginine biosynthesis
bsk00250  Alanine, aspartate and glutamate metabolism
bsk00280  Valine, leucine and isoleucine degradation
bsk00350  Tyrosine metabolism
bsk00470  D-Amino acid metabolism
bsk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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