KEGG   PATHWAY: bsn00020
Entry
bsn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus subtilis BSn5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsn00020  Citrate cycle (TCA cycle)
bsn00020

Module
bsn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsn00020]
bsn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsn00020]
bsn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsn00020]
bsn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsn00020]
bsn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsn00020]
Other DBs
GO: 0006099
Organism
Bacillus subtilis BSn5 [GN:bsn]
Gene
BSn5_02605  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
BSn5_05400  citrate synthase [KO:K01647] [EC:2.3.3.1]
BSn5_16600  citrate synthase I [KO:K01647] [EC:2.3.3.1]
BSn5_00330  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BSn5_05395  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BSn5_01030  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BSn5_01025  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BSn5_02565  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSn5_15950  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSn5_19380  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSn5_20160  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BSn5_20155  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BSn5_05045  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BSn5_05040  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BSn5_05050  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BSn5_07425  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BSn5_05390  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BSn5_19515  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BSn5_06125  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BSn5_19365  pyruvate dehydrogenase (E1 alpha subunit) [KO:K00161] [EC:1.2.4.1]
BSn5_19370  pyruvate dehydrogenase (E1 subunit beta) [KO:K00162] [EC:1.2.4.1]
BSn5_15945  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BSn5_19375  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsn00010  Glycolysis / Gluconeogenesis
bsn00053  Ascorbate and aldarate metabolism
bsn00061  Fatty acid biosynthesis
bsn00071  Fatty acid degradation
bsn00190  Oxidative phosphorylation
bsn00220  Arginine biosynthesis
bsn00250  Alanine, aspartate and glutamate metabolism
bsn00280  Valine, leucine and isoleucine degradation
bsn00350  Tyrosine metabolism
bsn00470  D-Amino acid metabolism
bsn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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