KEGG   PATHWAY: bstr00020
Entry
bstr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus stercoris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bstr00020  Citrate cycle (TCA cycle)
bstr00020

Module
bstr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bstr00020]
bstr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bstr00020]
bstr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bstr00020]
bstr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bstr00020]
bstr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bstr00020]
Other DBs
GO: 0006099
Organism
Bacillus stercoris [GN:bstr]
Gene
QI003_05165  citA; citrate synthase CitA [KO:K01647] [EC:2.3.3.1]
QI003_15445  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
QI003_17760  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
QI003_09735  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QI003_13160  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QI003_17755  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QI003_10480  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QI003_13910  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QI003_10475  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QI003_13905  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QI003_04405  acoL; acetoin dehydrogenase complex dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QI003_07895  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QI003_15405  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QI003_08650  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QI003_12075  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QI003_08645  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QI003_12070  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QI003_17400  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QI003_17395  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QI003_17405  sdhC; succinate dehydrogenase cytochrome B558 [KO:K00241]
QI003_19990  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QI003_17750  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QI003_08025  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
QI003_18490  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QI003_07880  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QI003_07885  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
QI003_04400  acoC; acetoin dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
QI003_07890  pdhC; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bstr00010  Glycolysis / Gluconeogenesis
bstr00053  Ascorbate and aldarate metabolism
bstr00061  Fatty acid biosynthesis
bstr00071  Fatty acid degradation
bstr00190  Oxidative phosphorylation
bstr00220  Arginine biosynthesis
bstr00250  Alanine, aspartate and glutamate metabolism
bstr00280  Valine, leucine and isoleucine degradation
bstr00350  Tyrosine metabolism
bstr00470  D-Amino acid metabolism
bstr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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