KEGG   PATHWAY: bsuc00020
Entry
bsuc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella suis bv. 2 Bs364CITA
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsuc00020  Citrate cycle (TCA cycle)
bsuc00020

Module
bsuc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsuc00020]
bsuc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsuc00020]
bsuc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsuc00020]
bsuc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsuc00020]
bsuc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsuc00020]
Other DBs
GO: 0006099
Organism
Brucella suis bv. 2 Bs364CITA [GN:bsuc]
Gene
BSSP2_I1167  gltA; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BSSP2_I0088  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BSSP2_I1217  Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
BSSP2_I1730  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BSSP2_I1729  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BSSP2_I1146  lpdA-1; Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
BSSP2_II0487  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSSP2_I1725  lpdA; Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSSP2_I1732  Succinyl-CoA ligase (ADP-forming) alpha chain [KO:K01902] [EC:6.2.1.5]
BSSP2_I1733  Succinyl-CoA ligase (ADP-forming) beta chain [KO:K01903] [EC:6.2.1.5]
BSSP2_I1076  Acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BSSP2_I1708  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BSSP2_I1707  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BSSP2_I1710  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BSSP2_I1709  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BSSP2_I0975  Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
BSSP2_II0157  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BSSP2_I1734  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BSSP2_II1224  pyc; Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
BSSP2_I1893  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BSSP2_I1149  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
BSSP2_I1148  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
BSSP2_I1147  aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BSSP2_II0002  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsuc00010  Glycolysis / Gluconeogenesis
bsuc00053  Ascorbate and aldarate metabolism
bsuc00061  Fatty acid biosynthesis
bsuc00071  Fatty acid degradation
bsuc00190  Oxidative phosphorylation
bsuc00220  Arginine biosynthesis
bsuc00250  Alanine, aspartate and glutamate metabolism
bsuc00280  Valine, leucine and isoleucine degradation
bsuc00350  Tyrosine metabolism
bsuc00470  D-Amino acid metabolism
bsuc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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