KEGG   PATHWAY: bsuv00020
Entry
bsuv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella suis bv. 2 PT09172
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsuv00020  Citrate cycle (TCA cycle)
bsuv00020

Module
bsuv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsuv00020]
bsuv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsuv00020]
bsuv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsuv00020]
bsuv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsuv00020]
bsuv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsuv00020]
Other DBs
GO: 0006099
Organism
Brucella suis bv. 2 PT09172 [GN:bsuv]
Gene
BSPT2_I0551  gltA; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BSPT2_I0088  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BSPT2_I0501  Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
BSPT2_I1725  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BSPT2_I1724  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BSPT2_I0572  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
BSPT2_I1720  lpdA; Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSPT2_II0482  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSPT2_I1727  Succinyl-CoA ligase (ADP-forming) alpha chain [KO:K01902] [EC:6.2.1.5]
BSPT2_I1728  Succinyl-CoA ligase (ADP-forming) beta chain [KO:K01903] [EC:6.2.1.5]
BSPT2_I0642  Acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BSPT2_I1703  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BSPT2_I1702  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BSPT2_I1705  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BSPT2_I1704  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BSPT2_I0740  Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
BSPT2_II0155  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BSPT2_I1729  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BSPT2_II1215  pyc; Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
BSPT2_I1890  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BSPT2_I0569  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
BSPT2_I0570  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
BSPT2_I0571  aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BSPT2_II0002  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsuv00010  Glycolysis / Gluconeogenesis
bsuv00053  Ascorbate and aldarate metabolism
bsuv00061  Fatty acid biosynthesis
bsuv00071  Fatty acid degradation
bsuv00190  Oxidative phosphorylation
bsuv00220  Arginine biosynthesis
bsuv00250  Alanine, aspartate and glutamate metabolism
bsuv00280  Valine, leucine and isoleucine degradation
bsuv00350  Tyrosine metabolism
bsuv00470  D-Amino acid metabolism
bsuv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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