KEGG   PATHWAY: bsw00020
Entry
bsw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella suis ZW043
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsw00020  Citrate cycle (TCA cycle)
bsw00020

Module
bsw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsw00020]
bsw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsw00020]
bsw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsw00020]
bsw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsw00020]
bsw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsw00020]
Other DBs
GO: 0006099
Organism
Brucella suis ZW043 [GN:bsw]
Gene
IY71_05700  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
IY71_00330  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IY71_05945  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IY71_09440  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
IY71_09435  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
IY71_09415  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IY71_05600  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IY71_13685  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IY71_09445  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
IY71_09450  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
IY71_05255  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
IY71_09330  fumarate reductase [KO:K00239] [EC:1.3.5.1]
IY71_09325  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
IY71_09340  succinate dehydrogenase [KO:K00241]
IY71_09335  succinate dehydrogenase [KO:K00242]
IY71_04765  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IY71_12040  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IY71_10060  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IY71_09455  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IY71_08740  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IY71_10560  hypothetical protein [KO:K01610] [EC:4.1.1.49]
IY71_05615  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
IY71_05610  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
IY71_11285  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
IY71_05605  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsw00010  Glycolysis / Gluconeogenesis
bsw00053  Ascorbate and aldarate metabolism
bsw00061  Fatty acid biosynthesis
bsw00071  Fatty acid degradation
bsw00190  Oxidative phosphorylation
bsw00220  Arginine biosynthesis
bsw00250  Alanine, aspartate and glutamate metabolism
bsw00280  Valine, leucine and isoleucine degradation
bsw00350  Tyrosine metabolism
bsw00470  D-Amino acid metabolism
bsw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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