KEGG   PATHWAY: btab00020
Entry
btab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bemisia tabaci (sweet potato whitefly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btab00020  Citrate cycle (TCA cycle)
btab00020

Module
btab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btab00020]
btab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btab00020]
btab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btab00020]
btab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btab00020]
btab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btab00020]
Other DBs
GO: 0006099
Organism
Bemisia tabaci (sweet potato whitefly) [GN:btab]
Gene
109031517  probable citrate synthase 1, mitochondrial [KO:K01647] [EC:2.3.3.1]
109033027  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
109030362  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
109044540  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
109034397  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
109030876  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
109039597  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
109039914  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
109031750  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109043293  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
109034218  uncharacterized protein LOC109034218 isoform X1 [KO:K00658] [EC:2.3.1.61]
109032698  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109044699  succinate--CoA ligase subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109044308  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109040438  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109044150  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
109038302  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
109031407  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
109037674  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
109044214  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
109032252  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109035578  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
109029627  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
109043550  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
109037445  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
109036277  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
109037667  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
109032936  pyruvate dehydrogenase protein X component, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
109036647  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btab00010  Glycolysis / Gluconeogenesis
btab00053  Ascorbate and aldarate metabolism
btab00061  Fatty acid biosynthesis
btab00062  Fatty acid elongation
btab00071  Fatty acid degradation
btab00190  Oxidative phosphorylation
btab00220  Arginine biosynthesis
btab00250  Alanine, aspartate and glutamate metabolism
btab00280  Valine, leucine and isoleucine degradation
btab00350  Tyrosine metabolism
btab00470  D-Amino acid metabolism
btab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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