KEGG   PATHWAY: bthu00020
Entry
bthu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus thuringiensis YBT-1518
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bthu00020  Citrate cycle (TCA cycle)
bthu00020

Module
bthu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bthu00020]
bthu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bthu00020]
bthu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bthu00020]
bthu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bthu00020]
bthu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bthu00020]
Other DBs
GO: 0006099
Organism
Bacillus thuringiensis YBT-1518 [GN:bthu]
Gene
YBT1518_12680  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
YBT1518_25395  citrate synthase [KO:K01647] [EC:2.3.3.1]
YBT1518_19840  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
YBT1518_25390  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
YBT1518_07330  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
YBT1518_07325  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
YBT1518_15300  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YBT1518_23005  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YBT1518_22020  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YBT1518_20725  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
YBT1518_20720  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
YBT1518_21025  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
YBT1518_21030  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
YBT1518_10350  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
YBT1518_24995  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
YBT1518_24990  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
YBT1518_25000  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
YBT1518_02595  fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
YBT1518_09925  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
YBT1518_25385  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YBT1518_16360  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
YBT1518_21905  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
YBT1518_26380  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
YBT1518_22035  pyruvate dehydrogenase complex E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
YBT1518_22030  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
YBT1518_15305  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
YBT1518_22025  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bthu00010  Glycolysis / Gluconeogenesis
bthu00053  Ascorbate and aldarate metabolism
bthu00061  Fatty acid biosynthesis
bthu00071  Fatty acid degradation
bthu00190  Oxidative phosphorylation
bthu00220  Arginine biosynthesis
bthu00250  Alanine, aspartate and glutamate metabolism
bthu00280  Valine, leucine and isoleucine degradation
bthu00350  Tyrosine metabolism
bthu00470  D-Amino acid metabolism
bthu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system